Motif IL_87744.2 Version IL_87744.2 of this group appears in releases 0.2 to 0.4
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 1-3 | 1-7 | 2-4 | 2-6 | 4-7 | 5-6 | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1FJG_032 | 1FJG | 0.0000 | 0 | Left turn (H) | A | SSU rRNA | G | 774 | G | 775 | G | 776 | A | 777 | G | 778 | * | U | 804 | C | 805 | cWW | cWW | ||||
2 | IL_2ZJR_028 | 2ZJR | 1.1582 | 2 | C-loop (H) | X | LSU rRNA | G | 877 | C | 878 | A | 879 | C | 880 | U | 881 | * | A | 921 | C | 924 | ntSW | cWW | ncSH | tWH | cWS | cWW |
3 | IL_3F1H_028 | 3F1H | 1.1892 | 2 | A | 23S RRNA | G | 864 | C | 865 | A | 866 | C | 867 | U | 868 | * | A | 909 | C | 912 | tSW | cWW | tWH | ncWS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GCACU*AAAC | 2 |
GGGAG*UC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
CAC*AA | 2 |
GGA* | 1 |
Release history
Parent motifs
Parent motif | Common motif instances | Only in IL_87744.2 | Only in the parent motif |
---|---|---|---|
IL_87744.1 Compare | IL_2ZJR_028, IL_3F1H_028 | IL_1FJG_032 | IL_1FJG_047 |
IL_44199.1 Compare | IL_1FJG_032 | IL_2ZJR_028, IL_3F1H_028 |
Children motifs
Child motif | Common motif instances | Only in IL_87744.2 | Only in the child motif |
---|---|---|---|
IL_68930.1 Compare | IL_2ZJR_028 | IL_1FJG_032, IL_3F1H_028 | IL_2XZM_022, IL_3PYO_047, IL_2QBG_033, IL_1S72_051, IL_3O30_023, IL_2QBG_050, IL_3O58_079, IL_1S72_091, IL_1FJG_015, IL_2ZJR_096, IL_1KOG_008, IL_1KOG_006, IL_1KOG_007, IL_1KOG_004, IL_1KOG_005, IL_1KOG_002, IL_2AW7_018, IL_1KOG_001, IL_2QBG_102 |
IL_75000.1 Compare | IL_1FJG_032 | IL_2ZJR_028, IL_3F1H_028 | IL_2AW7_039 |
- Annotations
-
- Left turn (H) (1)
- C-loop (H) (1)
- (1)
- Basepair signature
- Heat map statistics
- Min 0.16 | Avg 0.56 | Max 1.19
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