Motif IL_88180.1 Version IL_88180.1 of this group appears in releases 1.1 to 1.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3SN2_002 | 3SN2 | 0.0000 | 1 | Single bulged C | B | transferrin receptor iron regulatory element B RNA | G | 13 | C | 14 | * | G | 18 | C | 20 | cWW | cWW |
| 2 | IL_3V2F_102 | 3V2F | 0.5582 | 3 | A | 23S Ribosomal RNA | C | 2695 | U | 2696 | * | A | 2711 | G | 2714 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GC*GCC | 1 |
| CU*AUAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *C | 1 |
| *UAA | 1 |
Release history
| Release | 1.1 | 1.2 | 1.3 | 1.4 |
|---|---|---|---|---|
| Date | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_88180.1 | Only in the parent motif |
|---|---|---|---|
| IL_06429.3 Compare | IL_3SN2_002 | IL_3V2F_102 | IL_1XOK_002, IL_387D_001, IL_1U9S_008, IL_2QBG_022, IL_2QBG_097, IL_1XOK_001, IL_4A1B_113, IL_2ZJR_091, IL_3V2F_008, IL_3U5H_115, IL_1S72_086, IL_3SNP_002, IL_3U5H_031, IL_3V2F_095 |
| IL_18755.1 Compare | IL_3V2F_102 | IL_3SN2_002 |
Children motifs
| Child motif | Common motif instances | Only in IL_88180.1 | Only in the child motif |
|---|---|---|---|
| IL_18675.1 Compare | IL_3V2F_102 | IL_3SN2_002 | |
| IL_92109.2 Compare | IL_3SN2_002 | IL_3V2F_102 | IL_3V2F_095, IL_2QBG_097, IL_4BPP_033, IL_3U5F_033, IL_2QBG_022, IL_4A1B_113, IL_2AW7_029, IL_3V2F_008, IL_3U5H_115, IL_1S72_086, IL_3SNP_002, IL_3U5H_031, IL_4IOA_092, IL_4IOA_024 |
- Annotations
-
- Single bulged C (1)
- (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.56 | Avg 0.28 | Max 0.56
Coloring options: