#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 41-42-3
1 IL_2QBG_0972QBG0.53632B23S rRNAU2571G2574*C2512A2513cWWcWW
2 IL_3V2F_0953V2F0.36452A23S Ribosomal RNAC2571G2574*C2512G2513cWWcWW
3 IL_4IOA_0924IOA0.38222Multiple bulged basesX LSU rRNAC2550G2553*C2491G2492cWWcWW
4 IL_1S72_0861S720.000020 LSU rRNAG2606G2609*C2547C2548cWWcWW
5 IL_3U5H_1153U5H0.10142525S rRNAA2940G2943*C2881U2882cWWcWW
6 IL_4A1B_1134A1B0.13502126S RRNAA2928G2931*C2869U2870cWWcWW
7 IL_3SN2_0023SN20.51241Single bulged CBtransferrin receptor iron regulatory element B RNAG18C20*G13C14cWWcWW
8 IL_2QBG_0222QBG0.48181B23S rRNAG763C765*G697C698cWWcWW
9 IL_3SNP_0023SNP0.51071Cferritin H IRE RNAG18U20*A13C14cWWcWW
10 IL_3V2F_0083V2F0.52671A23S Ribosomal RNAG271|||MC271|||O*G271|||IC271|||JcWWcWW
11 IL_3U5H_0313U5H0.50031525S rRNAG859C861*G833U834cWWcWW
12 IL_4IOA_0244IOA0.74151Single bulged C (H)X LSU rRNAG938G940*C863C864cWWcWW
13 IL_3U5F_0333U5F0.58455618S rRNAG616A622*U1104C1105cWWcWW
14 IL_4BPP_0334BPP0.53945A18S RRNAG610A616*U1076C1077cWWcWW
15 IL_2AW7_0292AW70.76535A16S ribosomal RNAC569G575*C880G881cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
AACG*CU2
GUUAAAA*UC2
UACG*CA1
CG*CACG1
CACG*CG1
GUCG*CC1
GCC*GC1
GAC*GC1
GUU*AC1
GC*GUC1
GGC*GU1
GCG*CC1
CGUAAAG*CG1
Non-Watson-Crick part of the motif
SequenceCounts
AC*4
C*2
UUAAA*2
*AC1
UC*1
A*1
U*1
*U1
G*1
GUAAA*1

Release history

Release1.51.61.71.81.91.101.11
Date2013-08-032013-08-312013-09-282013-11-052013-12-072014-01-042014-02-01
StatusUpdated, 2 parentsExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Children motifs

Child motifCommon motif instancesOnly in IL_92109.2Only in the child motif
IL_92109.3
Compare
IL_3V2F_095, IL_2QBG_097, IL_4A1B_113, IL_4BPP_033, IL_3U5F_033, IL_2QBG_022, IL_3SN2_002, IL_3V2F_008, IL_3U5H_115, IL_1S72_086, IL_3SNP_002, IL_3U5H_031, IL_4IOA_092IL_2AW7_029, IL_4IOA_024IL_4OO8_002, IL_4IOA_099
IL_25300.3
Compare
IL_4IOA_024IL_3V2F_095, IL_2QBG_097, IL_4A1B_113, IL_4BPP_033, IL_3U5F_033, IL_2QBG_022, IL_3SN2_002, IL_2AW7_029, IL_3V2F_008, IL_3U5H_115, IL_1S72_086, IL_3SNP_002, IL_3U5H_031, IL_4IOA_092IL_2QBG_032, IL_2OZB_001, IL_1KXK_001, IL_4A1B_032, IL_3V2F_107, IL_3U5H_046
IL_47875.1
Compare
IL_2AW7_029IL_3V2F_095, IL_2QBG_097, IL_4A1B_113, IL_4BPP_033, IL_3U5F_033, IL_2QBG_022, IL_3SN2_002, IL_3V2F_008, IL_3U5H_115, IL_1S72_086, IL_3SNP_002, IL_3U5H_031, IL_4IOA_092, IL_4IOA_024IL_3U5F_086, IL_1FJG_022
Annotations
  • (12)
  • Single bulged C (1)
  • Single bulged C (H) (1)
  • Multiple bulged bases (1)
  • Basepair signature
    cWW-cWW
    Heat map statistics
    Min 0.08 | Avg 0.54 | Max 1.00
    Help

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