Motif IL_92109.2 Version IL_92109.2 of this group appears in releases 1.5 to 1.11

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2	break		3		4	1-4	2-3
1	IL_2QBG_097	2QBG	0.5363	2		B	LSU rRNA	U	2571	G	2574	*	C	2512	A	2513	cWW	cWW
2	IL_3V2F_095	3V2F	0.3645	2		A	LSU rRNA	C	2571	G	2574	*	C	2512	G	2513	cWW	cWW
3	IL_4IOA_092	4IOA	0.3822	2	Multiple bulged bases	X	LSU rRNA	C	2550	G	2553	*	C	2491	G	2492	cWW	cWW
4	IL_1S72_086	1S72	0.0000	2		0	LSU rRNA	G	2606	G	2609	*	C	2547	C	2548	cWW	cWW
5	IL_3U5H_115	3U5H	0.1014	2		5	LSU rRNA	A	2940	G	2943	*	C	2881	U	2882	cWW	cWW
6	IL_4A1B_113	4A1B	0.1350	2		1	LSU rRNA	A	2928	G	2931	*	C	2869	U	2870	cWW	cWW
7	IL_3SN2_002	3SN2	0.5124	1	Single bulged C	B	IRE II	G	18	C	20	*	G	13	C	14	cWW	cWW
8	IL_2QBG_022	2QBG	0.4818	1		B	LSU rRNA	G	763	C	765	*	G	697	C	698	cWW	cWW
9	IL_3SNP_002	3SNP	0.5107	1		C	IRE	G	18	U	20	*	A	13	C	14	cWW	cWW
10	IL_3V2F_008	3V2F	0.5267	1		A	LSU rRNA	G	271\|\|\|M	C	271\|\|\|O	*	G	271\|\|\|I	C	271\|\|\|J	cWW	cWW
11	IL_3U5H_031	3U5H	0.5003	1		5	LSU rRNA	G	859	C	861	*	G	833	U	834	cWW	cWW
12	IL_4IOA_024	4IOA	0.7415	1	Single bulged C (H)	X	LSU rRNA	G	938	G	940	*	C	863	C	864	cWW	cWW
13	IL_3U5F_033	3U5F	0.5845	5		6	SSU rRNA	G	616	A	622	*	U	1104	C	1105	cWW	cWW
14	IL_4BPP_033	4BPP	0.5394	5		A	SSU rRNA	G	610	A	616	*	U	1076	C	1077	cWW	cWW
15	IL_2AW7_029	2AW7	0.7653	5		A	SSU rRNA	C	569	G	575	*	C	880	G	881	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CACG*CG	2
AACG*CU	2
GUUAAAA*UC	2
UACG*CA	1
GUCG*CC	1
GCC*GC	1
GAC*GC	1
GUU*AC	1
GUC*GC	1
GGC*GU	1
GCG*CC	1
CGUAAAG*CG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AC*	5
C*	2
U*	2
UUAAA*	2
UC*	1
A*	1
G*	1
GUAAA*	1

Release history

Release	1.5	1.6	1.7	1.8	1.9	1.10	1.11
Date	2013-08-03	2013-08-31	2013-09-28	2013-11-05	2013-12-07	2014-01-04	2014-02-01
Status	Updated, 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

Parent motif	Common motif instances	Only in IL_92109.2	Only in the parent motif
IL_92109.1 Compare	IL_3V2F_095, IL_2QBG_097, IL_3U5F_033, IL_2QBG_022, IL_4A1B_113, IL_2AW7_029, IL_3V2F_008, IL_3U5H_115, IL_1S72_086, IL_3SNP_002, IL_3U5H_031, IL_4IOA_092, IL_4IOA_024	IL_4BPP_033, IL_3SN2_002	IL_2XZM_033, IL_1FJG_022
IL_88180.1 Compare	IL_3SN2_002	IL_3V2F_095, IL_2QBG_097, IL_4BPP_033, IL_3U5F_033, IL_2QBG_022, IL_4A1B_113, IL_2AW7_029, IL_3V2F_008, IL_3U5H_115, IL_1S72_086, IL_3SNP_002, IL_3U5H_031, IL_4IOA_092, IL_4IOA_024	IL_3V2F_102

Children motifs

Child motif	Common motif instances	Only in IL_92109.2	Only in the child motif
IL_92109.3 Compare	IL_3V2F_095, IL_2QBG_097, IL_4A1B_113, IL_4BPP_033, IL_3U5F_033, IL_2QBG_022, IL_3SN2_002, IL_3V2F_008, IL_3U5H_115, IL_1S72_086, IL_3SNP_002, IL_3U5H_031, IL_4IOA_092	IL_2AW7_029, IL_4IOA_024	IL_4OO8_002, IL_4IOA_099
IL_25300.3 Compare	IL_4IOA_024	IL_3V2F_095, IL_2QBG_097, IL_4A1B_113, IL_4BPP_033, IL_3U5F_033, IL_2QBG_022, IL_3SN2_002, IL_2AW7_029, IL_3V2F_008, IL_3U5H_115, IL_1S72_086, IL_3SNP_002, IL_3U5H_031, IL_4IOA_092	IL_2QBG_032, IL_2OZB_001, IL_1KXK_001, IL_4A1B_032, IL_3V2F_107, IL_3U5H_046
IL_47875.1 Compare	IL_2AW7_029	IL_3V2F_095, IL_2QBG_097, IL_4A1B_113, IL_4BPP_033, IL_3U5F_033, IL_2QBG_022, IL_3SN2_002, IL_3V2F_008, IL_3U5H_115, IL_1S72_086, IL_3SNP_002, IL_3U5H_031, IL_4IOA_092, IL_4IOA_024	IL_3U5F_086, IL_1FJG_022

Annotations: (12)
Single bulged C (1)
Single bulged C (H) (1)
Multiple bulged bases (1)
Basepair signature: cWW-cWW
Heat map statistics: Min 0.08 | Avg 0.54 | Max 1.00

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