Motif IL_92109.2 Version IL_92109.2 of this group appears in releases 1.5 to 1.11
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_2QBG_097 | 2QBG | 0.5363 | 2 | B | 23S rRNA | U | 2571 | G | 2574 | * | C | 2512 | A | 2513 | cWW | cWW | |
2 | IL_3V2F_095 | 3V2F | 0.3645 | 2 | A | 23S Ribosomal RNA | C | 2571 | G | 2574 | * | C | 2512 | G | 2513 | cWW | cWW | |
3 | IL_4IOA_092 | 4IOA | 0.3822 | 2 | Multiple bulged bases | X | LSU rRNA | C | 2550 | G | 2553 | * | C | 2491 | G | 2492 | cWW | cWW |
4 | IL_1S72_086 | 1S72 | 0.0000 | 2 | 0 | LSU rRNA | G | 2606 | G | 2609 | * | C | 2547 | C | 2548 | cWW | cWW | |
5 | IL_3U5H_115 | 3U5H | 0.1014 | 2 | 5 | 25S rRNA | A | 2940 | G | 2943 | * | C | 2881 | U | 2882 | cWW | cWW | |
6 | IL_4A1B_113 | 4A1B | 0.1350 | 2 | 1 | 26S RRNA | A | 2928 | G | 2931 | * | C | 2869 | U | 2870 | cWW | cWW | |
7 | IL_3SN2_002 | 3SN2 | 0.5124 | 1 | Single bulged C | B | transferrin receptor iron regulatory element B RNA | G | 18 | C | 20 | * | G | 13 | C | 14 | cWW | cWW |
8 | IL_2QBG_022 | 2QBG | 0.4818 | 1 | B | 23S rRNA | G | 763 | C | 765 | * | G | 697 | C | 698 | cWW | cWW | |
9 | IL_3SNP_002 | 3SNP | 0.5107 | 1 | C | ferritin H IRE RNA | G | 18 | U | 20 | * | A | 13 | C | 14 | cWW | cWW | |
10 | IL_3V2F_008 | 3V2F | 0.5267 | 1 | A | 23S Ribosomal RNA | G | 271|||M | C | 271|||O | * | G | 271|||I | C | 271|||J | cWW | cWW | |
11 | IL_3U5H_031 | 3U5H | 0.5003 | 1 | 5 | 25S rRNA | G | 859 | C | 861 | * | G | 833 | U | 834 | cWW | cWW | |
12 | IL_4IOA_024 | 4IOA | 0.7415 | 1 | Single bulged C (H) | X | LSU rRNA | G | 938 | G | 940 | * | C | 863 | C | 864 | cWW | cWW |
13 | IL_3U5F_033 | 3U5F | 0.5845 | 5 | 6 | 18S rRNA | G | 616 | A | 622 | * | U | 1104 | C | 1105 | cWW | cWW | |
14 | IL_4BPP_033 | 4BPP | 0.5394 | 5 | A | 18S RRNA | G | 610 | A | 616 | * | U | 1076 | C | 1077 | cWW | cWW | |
15 | IL_2AW7_029 | 2AW7 | 0.7653 | 5 | A | 16S ribosomal RNA | C | 569 | G | 575 | * | C | 880 | G | 881 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
AACG*CU | 2 |
GUUAAAA*UC | 2 |
UACG*CA | 1 |
CG*CACG | 1 |
CACG*CG | 1 |
GUCG*CC | 1 |
GCC*GC | 1 |
GAC*GC | 1 |
GUU*AC | 1 |
GC*GUC | 1 |
GGC*GU | 1 |
GCG*CC | 1 |
CGUAAAG*CG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AC* | 4 |
C* | 2 |
UUAAA* | 2 |
*AC | 1 |
UC* | 1 |
A* | 1 |
U* | 1 |
*U | 1 |
G* | 1 |
GUAAA* | 1 |
Release history
Release | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 |
---|---|---|---|---|---|---|---|
Date | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 |
Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
Parent motif | Common motif instances | Only in IL_92109.2 | Only in the parent motif |
---|---|---|---|
IL_92109.1 Compare | IL_3V2F_095, IL_2QBG_097, IL_3U5F_033, IL_2QBG_022, IL_4A1B_113, IL_2AW7_029, IL_3V2F_008, IL_3U5H_115, IL_1S72_086, IL_3SNP_002, IL_3U5H_031, IL_4IOA_092, IL_4IOA_024 | IL_4BPP_033, IL_3SN2_002 | IL_2XZM_033, IL_1FJG_022 |
IL_88180.1 Compare | IL_3SN2_002 | IL_3V2F_095, IL_2QBG_097, IL_4BPP_033, IL_3U5F_033, IL_2QBG_022, IL_4A1B_113, IL_2AW7_029, IL_3V2F_008, IL_3U5H_115, IL_1S72_086, IL_3SNP_002, IL_3U5H_031, IL_4IOA_092, IL_4IOA_024 | IL_3V2F_102 |
Children motifs
Child motif | Common motif instances | Only in IL_92109.2 | Only in the child motif |
---|---|---|---|
IL_92109.3 Compare | IL_3V2F_095, IL_2QBG_097, IL_4A1B_113, IL_4BPP_033, IL_3U5F_033, IL_2QBG_022, IL_3SN2_002, IL_3V2F_008, IL_3U5H_115, IL_1S72_086, IL_3SNP_002, IL_3U5H_031, IL_4IOA_092 | IL_2AW7_029, IL_4IOA_024 | IL_4OO8_002, IL_4IOA_099 |
IL_25300.3 Compare | IL_4IOA_024 | IL_3V2F_095, IL_2QBG_097, IL_4A1B_113, IL_4BPP_033, IL_3U5F_033, IL_2QBG_022, IL_3SN2_002, IL_2AW7_029, IL_3V2F_008, IL_3U5H_115, IL_1S72_086, IL_3SNP_002, IL_3U5H_031, IL_4IOA_092 | IL_2QBG_032, IL_2OZB_001, IL_1KXK_001, IL_4A1B_032, IL_3V2F_107, IL_3U5H_046 |
IL_47875.1 Compare | IL_2AW7_029 | IL_3V2F_095, IL_2QBG_097, IL_4A1B_113, IL_4BPP_033, IL_3U5F_033, IL_2QBG_022, IL_3SN2_002, IL_3V2F_008, IL_3U5H_115, IL_1S72_086, IL_3SNP_002, IL_3U5H_031, IL_4IOA_092, IL_4IOA_024 | IL_3U5F_086, IL_1FJG_022 |
- Annotations
-
- (12)
- Single bulged C (1)
- Single bulged C (H) (1)
- Multiple bulged bases (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.08 | Avg 0.54 | Max 1.00
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