Motif IL_88416.1 Version IL_88416.1 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 3-4 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1S72_072 | 1S72 | 0.0000 | 0 | 0 | LSU rRNA | G | 2090 | G | 2091 | G | 2092 | G | 2093 | * | U | 2652 | A | 2653 | C | 2654 | cWW | cWW | cSH | cWW |
| 2 | IL_1VWW_121 | 1VWW | 0.5974 | 1 | 5 | LSU rRNA | G | 3744 | U | 3745 | A | 3746 | A | 3748 | * | U | 3704 | G | 3705 | C | 3706 | ncWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGGG*UAC | 1 |
| UGC*GUAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GG*A | 1 |
| G*UAA | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_88416.1 | Only in the parent motif |
|---|---|---|---|
| IL_38207.1 Compare | IL_1S72_072 | IL_1VWW_121 | IL_3E5C_001 |
Children motifs
| Child motif | Common motif instances | Only in IL_88416.1 | Only in the child motif |
|---|---|---|---|
| IL_84401.1 Compare | IL_1S72_072 | IL_1VWW_121 | IL_1VX6_098, IL_3E5C_001 |
- Annotations
-
- (2)
- Basepair signature
- cWW-cWW-cSH-cWW
- Heat map statistics
- Min 0.60 | Avg 0.30 | Max 0.60
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