Motif IL_38207.1 Version IL_38207.1 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 3-4 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1S72_072 | 1S72 | 0.0000 | 0 | 0 | LSU rRNA | G | 2090 | G | 2091 | G | 2092 | G | 2093 | * | U | 2652 | A | 2653 | C | 2654 | cWW | cWW | cSH | cWW | |
| 2 | IL_3E5C_001 | 3E5C | 0.7331 | 2 | Isolated non-canonical cWW pair | A | SMK box (SAM-III) Riboswitch | A | 27 | G | 28 | G | 31 | C | 32 | * | G | 12 | A | 13 | U | 14 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGGG*UAC | 1 |
| AGAUGC*GAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GG*A | 1 |
| GAUG*A | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_38207.1 | Only in the parent motif |
|---|---|---|---|
| IL_31663.1 Compare | IL_1S72_072 | IL_3E5C_001 | IL_3U5H_096, IL_4A1B_089, IL_4IOA_061 |
| IL_86453.1 Compare | IL_3E5C_001 | IL_1S72_072 |
Children motifs
| Child motif | Common motif instances | Only in IL_38207.1 | Only in the child motif |
|---|---|---|---|
| IL_60760.1 Compare | IL_3E5C_001 | IL_1S72_072 | IL_3Q1Q_006, IL_3BNL_002, IL_4M4O_004, IL_4CUV_113, IL_4M6D_013 |
| IL_88416.1 Compare | IL_1S72_072 | IL_3E5C_001 | IL_1VWW_121 |
- Annotations
-
- (1)
- Isolated non-canonical cWW pair (1)
- Basepair signature
- cWW-cWW-L-cWW
- Heat map statistics
- Min 0.73 | Avg 0.37 | Max 0.73
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