Motif IL_88428.1 Version IL_88428.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-9 | 4-8 | 5-8 | 6-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5TBW_026 | 5TBW | 0.8845 | 1 | 1 | LSU rRNA | C | 758 | U | 759 | G | 760 | A | 761 | U | 762 | G | 763 | * | C | 768 | G | 769 | A | 771 | U | 772 | G | 773 | cWW | cwW | tSH | |||
| 2 | IL_8C3A_028 | 8C3A | 0.8555 | 1 | 1 | LSU rRNA | C | 754 | U | 755 | G | 756 | A | 757 | U | 758 | G | 759 | * | C | 764 | G | 765 | A | 767 | U | 768 | G | 769 | cWW | cwW | tSH | tHS | cWW | |
| 3 | IL_1M5K_001 | 1M5K | 0.1523 | 1 | B+A | RNA HAIRPIN RIBOZYME | G | 6 | A | 7 | G | 8 | A | 9 | A | 10 | G | 11 | * | C | 11 | A2M | 12 | U | 14 | C | 15 | C | 16 | cWW | cWWa | tSH | ntHS | cWW | |
| 4 | IL_3BBM_001 | 3BBM | 0.0000 | 0 | B+A | Loop A and Loop B Ribozyme strand | G | 6 | A | 7 | G | 8 | A | 9 | A | 10 | G | 11 | * | C | 4 | A2M | 5 | U | 7 | C | 8 | C | 9 | cWW | cWWa | tSH | ntHS | cWW | |
| 5 | IL_3GS5_001 | 3GS5 | 0.1103 | 1 | A | RNA (25-MER) | G | 18 | A | 19 | G | 20||A | A | 21 | A | 22 | G | 23 | * | C | 4 | A | 5 | U | 7 | C | 8 | C | 9 | cWW | cWWa | tSH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGAUG*CGGAUG | 2 |
| GAGAAG*C(A2M)GUCC | 1 |
| GAGAAG*CGUCC | 1 |
| GAGAAG*CAGUCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGAU*GGAU | 2 |
| AGAA*(A2M)GUC | 1 |
| AGAA*GUC | 1 |
| AGAA*AGUC | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-cWW-tSH-L-R-L-cWW
- Heat map statistics
- Min 0.11 | Avg 0.48 | Max 0.95
Coloring options: