Motif IL_89231.1 Version IL_89231.1 of this group appears in releases 0.10 to 1.1
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | break | 11 | 12 | 1-12 | 5-9 | 10-11 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1MZP_002 | 1MZP | 0.0000 | 1 | B | fragment of 23S rRNA | G | 6 | C | 7 | G | 8 | U | 9 | A | 10 | G | 11 | A | 13 | U | 14 | A | 15 | G | 16 | * | C | 49 | C | 50 | cWW | tWH | cWW |
| 2 | IL_3UMY_002 | 3UMY | 0.2865 | 1 | B | LSU rRNA | G | 2110 | C | 2111 | G | 2112 | U | 2113 | A | 2114 | G | 2115 | A | 2117 | U | 2118 | A | 2119 | G | 2120 | * | C | 2178 | C | 2179 | cWW | tWH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCGUAGGAUAG*CC | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGUAGGAUA* | 2 |
Release history
| Release | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 |
|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_89231.1 | Only in the parent motif |
|---|---|---|---|
| IL_99575.1 Compare | IL_1MZP_002 | IL_3UMY_002 | IL_3U4M_002 |
Children motifs
| Child motif | Common motif instances | Only in IL_89231.1 | Only in the child motif |
|---|---|---|---|
| IL_94403.1 Compare | IL_3UMY_002, IL_1MZP_002 | IL_3V2F_082, IL_4JRC_004 |
- Annotations
-
- (2)
- Basepair signature
- cWW-L-L-L-tWH-L-L-L-cWW
- Heat map statistics
- Min 0.29 | Avg 0.14 | Max 0.29
Coloring options: