Motif IL_90133.4 Version IL_90133.4 of this group appears in releases 1.14 to 1.14
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-7 | 3-6 | 4-5 | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_3BNL_003 | 3BNL | 0.5291 | 0 | A+B | A site of bacterial ribosome | G | 15 | A | 16 | A | 17 | G | 18 | * | C | 6 | A | 7 | C | 8 | cWW | cWw | cWW | |
2 | IL_3U5F_028 | 3U5F | 0.5804 | 0 | 6 | 18S rRNA | U | 533 | A | 534 | A | 535 | C | 536 | * | G | 516 | U | 517 | A | 518 | cWW | tHS | ncWW | cWW |
3 | IL_2AW7_006 | 2AW7 | 0.5160 | 0 | A | 16S ribosomal RNA | C | 99 | G | 100 | A | 101 | G | 102 | * | C | 67 | G | 68 | G | 69 | cWW | tHS | cWW | cWW |
4 | IL_3U5F_068 | 3U5F | 0.0000 | 3 | 6 | 18S rRNA | U | 1430 | G | 1433 | U | 1434 | A | 1436 | * | U | 1276 | G | 1277 | G | 1278 | cWW | tHS | ncWWa | cWW |
5 | IL_4BPP_066 | 4BPP | 0.1153 | 3 | A | 18S RRNA | U | 1401 | G | 1404 | U | 1405 | A | 1407 | * | U | 1248 | G | 1249 | G | 1250 | cWW | tHS | ncBW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UCUGUGA*UGG | 2 |
GAAG*CAC | 1 |
UAAC*GUA | 1 |
CGAG*CGG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
CUGUG*G | 2 |
AA*A | 1 |
AA*U | 1 |
GA*G | 1 |
Release history
Release | 1.14 |
---|---|
Date | 2014-04-27 |
Status | Updated, 2 parents |
Parent motifs
Parent motif | Common motif instances | Only in IL_90133.4 | Only in the parent motif |
---|---|---|---|
IL_90133.3 Compare | IL_4BPP_066, IL_2AW7_006, IL_3U5F_028, IL_3U5F_068 | IL_3BNL_003 | IL_3V2F_031, IL_1S72_053 |
IL_37325.1 Compare | IL_3BNL_003 | IL_4BPP_066, IL_2AW7_006, IL_3U5F_028, IL_3U5F_068 |
Children motifs
Child motif | Common motif instances | Only in IL_90133.4 | Only in the child motif |
---|---|---|---|
IL_90133.5 Compare | IL_4BPP_066, IL_2AW7_006, IL_3U5F_028, IL_3U5F_068 | IL_3BNL_003 | IL_4CUX_005, IL_4N0T_004 |
IL_72367.1 Compare | IL_3BNL_003 | IL_4BPP_066, IL_2AW7_006, IL_3U5F_028, IL_3U5F_068 |
- Annotations
-
- (5)
- Basepair signature
- cWW-tHS-cWW-cWW
- Heat map statistics
- Min 0.12 | Avg 0.39 | Max 0.62
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