#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4break 5 6 71-72-73-64-5
1 IL_3BNL_0033BNL0.52910A+BA site of bacterial ribosomeG15A16A17G18*C6A7C8cWWcWwcWW
2 IL_3U5F_0283U5F0.58040618S rRNAU533A534A535C536*G516U517A518cWWtHSncWWcWW
3 IL_2AW7_0062AW70.51600A16S ribosomal RNAC99G100A101G102*C67G68G69cWWtHScWWcWW
4 IL_3U5F_0683U5F0.00003618S rRNAU1430G1433U1434A1436*U1276G1277G1278cWWtHSncWWacWW
5 IL_4BPP_0664BPP0.11533A18S RRNAU1401G1404U1405A1407*U1248G1249G1250cWWtHSncBWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UCUGUGA*UGG2
GAAG*CAC1
UAAC*GUA1
CGAG*CGG1
Non-Watson-Crick part of the motif
SequenceCounts
CUGUG*G2
AA*A1
AA*U1
GA*G1

Release history

Release1.14
Date2014-04-27
StatusUpdated, 2 parents

Parent motifs

Children motifs

Child motifCommon motif instancesOnly in IL_90133.4Only in the child motif
IL_90133.5
Compare
IL_4BPP_066, IL_2AW7_006, IL_3U5F_028, IL_3U5F_068IL_3BNL_003IL_4CUX_005, IL_4N0T_004
IL_72367.1
Compare
IL_3BNL_003IL_4BPP_066, IL_2AW7_006, IL_3U5F_028, IL_3U5F_068
Annotations
  • (5)
  • Basepair signature
    cWW-tHS-cWW-cWW
    Heat map statistics
    Min 0.12 | Avg 0.39 | Max 0.62
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