Motif IL_90133.3 Version IL_90133.3 of this group appears in releases 1.5 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-4 | 3-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4BPP_066 | 4BPP | 0.6228 | 3 | A | 18S RRNA | U | 1248 | G | 1249 | G | 1250 | * | U | 1401 | G | 1404 | U | 1405 | A | 1407 | cWW | cWW | tSH | ||
| 2 | IL_3U5F_068 | 3U5F | 0.5804 | 3 | 6 | 18S rRNA | U | 1276 | G | 1277 | G | 1278 | * | U | 1430 | G | 1433 | U | 1434 | A | 1436 | cWW | cWW | tSH | ||
| 3 | IL_2AW7_006 | 2AW7 | 0.4335 | 0 | A | 16S ribosomal RNA | C | 67 | G | 68 | G | 69 | * | C | 99 | G | 100 | A | 101 | G | 102 | cWW | cWW | cWW | tSH | |
| 4 | IL_3U5F_028 | 3U5F | 0.0000 | 0 | 6 | 18S rRNA | G | 516 | U | 517 | A | 518 | * | U | 533 | A | 534 | A | 535 | C | 536 | cWW | ncWW | cWW | tSH | |
| 5 | IL_3V2F_031 | 3V2F | 0.3199 | 0 | A | 23S Ribosomal RNA | G | 875 | C | 876 | U | 877 | * | A | 899 | A | 900 | A | 901 | C | 902 | cWW | cWW | tSH | ||
| 6 | IL_1S72_053 | 1S72 | 0.5015 | 0 | 0 | LSU rRNA | A | 1465 | C | 1466 | C | 1467 | * | G | 1475 | A | 1476 | C | 1477 | U | 1478 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGG*UCUGUGA | 2 |
| CGG*CGAG | 1 |
| GUA*UAAC | 1 |
| GCU*AAAC | 1 |
| ACC*GACU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*CUGUG | 2 |
| G*GA | 1 |
| U*AA | 1 |
| C*AA | 1 |
| C*AC | 1 |
Release history
| Release | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_90133.3 | Only in the parent motif |
|---|---|---|---|
| IL_90133.2 Compare | IL_3U5F_028, IL_2AW7_006, IL_3V2F_031, IL_1S72_053 | IL_4BPP_066, IL_3U5F_068 | IL_4A1B_089, IL_4IOA_061 |
| IL_54420.1 Compare | IL_3U5F_068 | IL_4BPP_066, IL_3U5F_028, IL_2AW7_006, IL_3V2F_031, IL_1S72_053 | IL_2XZM_067, IL_1FJG_063, IL_2XZM_073, IL_4GMA_007, IL_4GXY_009 |
Children motifs
| Child motif | Common motif instances | Only in IL_90133.3 | Only in the child motif |
|---|---|---|---|
| IL_90133.4 Compare | IL_4BPP_066, IL_2AW7_006, IL_3U5F_028, IL_3U5F_068 | IL_3V2F_031, IL_1S72_053 | IL_3BNL_003 |
| IL_55214.1 Compare | IL_1S72_053 | IL_4BPP_066, IL_3U5F_028, IL_2AW7_006, IL_3V2F_031, IL_3U5F_068 | IL_3MEI_004, IL_1VW3_056, IL_2O3V_003, IL_4KR6_002, IL_1VW3_022, IL_4NVV_035, IL_1VW3_029 |
- Annotations
- Basepair signature
- cWW-bif-tSH-cWW
- Heat map statistics
- Min 0.12 | Avg 0.45 | Max 0.85
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