Motif IL_90877.1 Version IL_90877.1 of this group appears in releases 1.14 to 1.15
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 4-5 | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1VW3_014 | 1VW3 | 0.0000 | 1 | A | 21S ribosomal RNA | A | 433 | U | 434 | G | 435 | A | 436 | * | U | 453 | A | 455 | U | 456 | cWW | tSH | cWW |
2 | IL_4KQY_005 | 4KQY | 0.8369 | 1 | A | SAM-I riboswitch | U | 52 | G | 53 | A | 55 | A | 56 | * | U | 69 | G | 70 | A | 71 | cWW | ncWB | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
AUGA*UAAU | 1 |
UGUAA*UGA | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UG*AA | 1 |
GUA*G | 1 |
Release history
Parent motifs
Parent motif | Common motif instances | Only in IL_90877.1 | Only in the parent motif |
---|---|---|---|
IL_41153.1 Compare | IL_4KQY_005 | IL_1VW3_014 |
Children motifs
Child motif | Common motif instances | Only in IL_90877.1 | Only in the child motif |
---|---|---|---|
IL_82600.1 Compare | IL_4KQY_005 | IL_1VW3_014 | IL_4CUX_020, IL_1VWW_035 |
IL_92986.1 Compare | IL_1VW3_014 | IL_4KQY_005 |
- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-L-cWW
- Heat map statistics
- Min 0.84 | Avg 0.42 | Max 0.84
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