Motif IL_82600.1 Version IL_82600.1 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4CUX_020 | 4CUX | 0.7536 | 3 | 2 | 18S RRNA | C | 317 | U | 318 | U | 319 | A | 323 | * | U | 345 | G | 346 | G | 347 | cWW | ncWW | ncWW |
| 2 | IL_4KQY_005 | 4KQY | 0.0000 | 1 | A | SAM-I riboswitch | U | 52 | G | 53 | A | 55 | A | 56 | * | U | 69 | G | 70 | A | 71 | cWW | ncWB | cWW |
| 3 | IL_1VWW_035 | 1VWW | 0.6932 | 1 | 5 | 28S ribosomal RNA | G | 726 | C | 727 | G | 730 | G | 731 | * | C | 938 | G | 939 | C | 940 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUUCGA*UGG | 1 |
| UGUAA*UGA | 1 |
| CGAG*CGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUUCG*G | 1 |
| GUA*G | 1 |
| GA*GA | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_82600.1 | Only in the parent motif |
|---|---|---|---|
| IL_90877.1 Compare | IL_4KQY_005 | IL_4CUX_020, IL_1VWW_035 | IL_1VW3_014 |
| IL_72641.2 Compare | IL_4CUX_020 | IL_4KQY_005, IL_1VWW_035 | IL_4ERD_003, IL_2ZI0_001 |
Children motifs
| Child motif | Common motif instances | Only in IL_82600.1 | Only in the child motif |
|---|---|---|---|
| IL_92942.1 Compare | IL_4KQY_005, IL_4CUX_020 | IL_1VWW_035 | IL_4W21_034, IL_4W21_063 |
- Annotations
-
- (3)
- Basepair signature
- cWW-L-R-L-cWW
- Heat map statistics
- Min 0.69 | Avg 0.50 | Max 0.81
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