#SLoop idPDBDisc#Non-coreChain(s)Standardized name for chain 1 2 3 4break 5 6 71-72-64-5
1 IL_4CUX_0204CUX0.75363218S RRNAC317U318U319A323*U345G346G347cWWncWWncWW
2 IL_4KQY_0054KQY0.00001A SAM-I riboswitchU52G53A55A56*U69G70A71cWWncWBcWW
3 IL_1VWW_0351VWW0.69321528S ribosomal RNAG726C727G730G731*C938G939C940cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUUUCGA*UGG1
UGUAA*UGA1
CGAG*CGAG1
Non-Watson-Crick part of the motif
SequenceCounts
UUUCG*G1
GUA*G1
GA*GA1

Release history

Release1.17
Date2014-09-04
StatusNew id, 2 parents

Parent motifs

Children motifs

Child motifCommon motif instancesOnly in IL_82600.1Only in the child motif
IL_92942.1
Compare
IL_4KQY_005, IL_4CUX_020IL_1VWW_035IL_4W21_034, IL_4W21_063
Annotations
  • (3)
  • Basepair signature
    cWW-L-R-L-cWW
    Heat map statistics
    Min 0.69 | Avg 0.50 | Max 0.81
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