Motif IL_90933.1 Version IL_90933.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5UNE_008 | 5UNE | 0.0000 | 3 | Isolated basepair with bulged bases | B+A | RNA (47-MER) | U | 10 | G | 11 | G | 12 | * | C | 33 | G | 34 | A | 38 | cWW | ntHS | ncWW |
| 2 | IL_4V9F_087 | 4V9F | 0.4295 | 2 | Isolated non-canonical cWW pair | 0 | LSU rRNA | U | 2545 | U | 2546 | C | 2547 | * | G | 2609 | U | 2610 | G | 2613 | cWW | cWw | cWW |
| 3 | IL_5TBW_108 | 5TBW | 0.5353 | 2 | Isolated non-canonical cWW with bulges | 1 | LSU rRNA | C | 2879 | U | 2880 | C | 2881 | * | G | 2943 | U | 2944 | G | 2947 | cWW | cWw | cWW |
| 4 | IL_7A0S_089 | 7A0S | 0.4047 | 2 | Isolated non-canonical cWW with bulges | X | LSU rRNA | C | 2489 | U | 2490 | C | 2491 | * | G | 2553 | C | 2554 | G | 2557 | cWW | cWW | |
| 5 | IL_4WF9_095 | 4WF9 | 0.4059 | 2 | Isolated non-canonical cWW with bulges | X | LSU rRNA | C | 2537 | U | 2538 | C | 2539 | * | G | 2601 | C | 2602 | G | 2605 | cWW | ncWW | cWW |
| 6 | IL_7RQB_097 | 7RQB | 0.4245 | 2 | Isolated non-canonical cWW with bulges | 1A | LSU rRNA | C | 2510 | U | 2511 | C | 2512 | * | G | 2574 | C | 2575 | G | 2578 | cWW | ncWW | cWW |
| 7 | IL_5J7L_340 | 5J7L | 0.4176 | 2 | Isolated non-canonical cWW with bulges | DA | LSU rRNA | C | 2510 | U | 2511 | C | 2512 | * | G | 2574 | C | 2575 | G | 2578 | cWW | ncWW | cWW |
| 8 | IL_4PKD_001 | 4PKD | 0.4173 | 1 | Isolated non-canonical cWW with bulges | V | U1 snRNA stem-loops 1 and 2 (55-MER) | G | 106 | U | 107 | U | 108 | * | A | 86 | U | 87 | C | 89 | cWW | cWw | cWW |
| 9 | IL_5TBW_132 | 5TBW | 0.9344 | 3 | Isolated non-canonical cWW pair | 1 | LSU rRNA | G | 3328 | U | 3329 | A | 3330 | * | U | 3373 | U | 3374 | C | 3378 | cWW | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUC*GCGAG | 4 |
| UGG*CGGAAA | 1 |
| UUC*GUGAG | 1 |
| CUC*GUGAG | 1 |
| GUU*AUAC | 1 |
| GUA*UUAAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U*CGA | 4 |
| U*UGA | 2 |
| G*GGAA | 1 |
| U*UA | 1 |
| U*UAAG | 1 |
- Annotations
-
- Isolated non-canonical cWW with bulges (6)
- Isolated non-canonical cWW pair (2)
- Isolated basepair with bulged bases (1)
- Basepair signature
- cWW-cWW-cWW
- Heat map statistics
- Min 0.10 | Avg 0.24 | Max 0.93
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