RNA 3D Hub //

Motif IL_90933.1 Version IL_90933.1 of this group appears in releases 3.77 to 3.79

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-62-53-4
1 IL_5UNE_0085UNE0.00003Isolated basepair with bulged basesB+ARNA (47-MER)U10G11G12*C33G34A38cWWntHSncWW
2 IL_4V9F_0874V9F0.42952Isolated non-canonical cWW pair0 LSU rRNAU2545U2546C2547*G2609U2610G2613cWWcWwcWW
3 IL_5TBW_1085TBW0.53532Isolated non-canonical cWW with bulges1 LSU rRNAC2879U2880C2881*G2943U2944G2947cWWcWwcWW
4 IL_7A0S_0897A0S0.40472Isolated non-canonical cWW with bulgesX LSU rRNAC2489U2490C2491*G2553C2554G2557cWWcWW
5 IL_4WF9_0954WF90.40592Isolated non-canonical cWW with bulgesX LSU rRNAC2537U2538C2539*G2601C2602G2605cWWncWWcWW
6 IL_7RQB_0977RQB0.42452Isolated non-canonical cWW with bulges1A LSU rRNAC2510U2511C2512*G2574C2575G2578cWWncWWcWW
7 IL_5J7L_3405J7L0.41762Isolated non-canonical cWW with bulgesDA LSU rRNAC2510U2511C2512*G2574C2575G2578cWWncWWcWW
8 IL_4PKD_0014PKD0.41731Isolated non-canonical cWW with bulgesVU1 snRNA stem-loops 1 and 2 (55-MER)G106U107U108*A86U87C89cWWcWwcWW
9 IL_5TBW_1325TBW0.93443Isolated non-canonical cWW pair1 LSU rRNAG3328U3329A3330*U3373U3374C3378cWWcWwcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUC*GCGAG4
UGG*CGGAAA1
UUC*GUGAG1
CUC*GUGAG1
GUU*AUAC1
GUA*UUAAGC1
Non-Watson-Crick part of the motif
SequenceCounts
U*CGA4
U*UGA2
G*GGAA1
U*UA1
U*UAAG1

Release history

Release3.773.783.79
Date2023-12-062024-01-032024-01-03
StatusNew id, > 2 parentsExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Isolated non-canonical cWW with bulges (6)
  • Isolated non-canonical cWW pair (2)
  • Isolated basepair with bulged bases (1)
    • Basepair signature
    cWW-cWW-cWW
    Heat map statistics
    Min 0.10 | Avg 0.24 | Max 0.93
    Help

    Coloring options:

    IL_5UNE_008:IL_5UNE_008 = 0IL_5UNE_008:IL_4V9F_087 = 0.4295IL_5UNE_008:IL_5TBW_108 = 0.5353IL_5UNE_008:IL_7A0S_089 = 0.4047IL_5UNE_008:IL_4WF9_095 = 0.4059IL_5UNE_008:IL_7RQB_097 = 0.4245IL_5UNE_008:IL_5J7L_340 = 0.4176IL_5UNE_008:IL_4PKD_001 = 0.4173IL_5UNE_008:IL_5TBW_132 = 0.9344IL_4V9F_087:IL_5UNE_008 = 0.4295IL_4V9F_087:IL_4V9F_087 = 0IL_4V9F_087:IL_5TBW_108 = 0.2254IL_4V9F_087:IL_7A0S_089 = 0.1938IL_4V9F_087:IL_4WF9_095 = 0.2102IL_4V9F_087:IL_7RQB_097 = 0.1752IL_4V9F_087:IL_5J7L_340 = 0.2131IL_4V9F_087:IL_4PKD_001 = 0.3139IL_4V9F_087:IL_5TBW_132 = 0.3739IL_5TBW_108:IL_5UNE_008 = 0.5353IL_5TBW_108:IL_4V9F_087 = 0.2254IL_5TBW_108:IL_5TBW_108 = 0IL_5TBW_108:IL_7A0S_089 = 0.216IL_5TBW_108:IL_4WF9_095 = 0.2352IL_5TBW_108:IL_7RQB_097 = 0.1985IL_5TBW_108:IL_5J7L_340 = 0.2246IL_5TBW_108:IL_4PKD_001 = 0.2882IL_5TBW_108:IL_5TBW_132 = 0.3567IL_7A0S_089:IL_5UNE_008 = 0.4047IL_7A0S_089:IL_4V9F_087 = 0.1938IL_7A0S_089:IL_5TBW_108 = 0.216IL_7A0S_089:IL_7A0S_089 = 0IL_7A0S_089:IL_4WF9_095 = 0.1156IL_7A0S_089:IL_7RQB_097 = 0.1141IL_7A0S_089:IL_5J7L_340 = 0.1496IL_7A0S_089:IL_4PKD_001 = 0.2291IL_7A0S_089:IL_5TBW_132 = 0.2863IL_4WF9_095:IL_5UNE_008 = 0.4059IL_4WF9_095:IL_4V9F_087 = 0.2102IL_4WF9_095:IL_5TBW_108 = 0.2352IL_4WF9_095:IL_7A0S_089 = 0.1156IL_4WF9_095:IL_4WF9_095 = 0IL_4WF9_095:IL_7RQB_097 = 0.1102IL_4WF9_095:IL_5J7L_340 = 0.1078IL_4WF9_095:IL_4PKD_001 = 0.1887IL_4WF9_095:IL_5TBW_132 = 0.2343IL_7RQB_097:IL_5UNE_008 = 0.4245IL_7RQB_097:IL_4V9F_087 = 0.1752IL_7RQB_097:IL_5TBW_108 = 0.1985IL_7RQB_097:IL_7A0S_089 = 0.1141IL_7RQB_097:IL_4WF9_095 = 0.1102IL_7RQB_097:IL_7RQB_097 = 0IL_7RQB_097:IL_5J7L_340 = 0.1024IL_7RQB_097:IL_4PKD_001 = 0.1941IL_7RQB_097:IL_5TBW_132 = 0.2679IL_5J7L_340:IL_5UNE_008 = 0.4176IL_5J7L_340:IL_4V9F_087 = 0.2131IL_5J7L_340:IL_5TBW_108 = 0.2246IL_5J7L_340:IL_7A0S_089 = 0.1496IL_5J7L_340:IL_4WF9_095 = 0.1078IL_5J7L_340:IL_7RQB_097 = 0.1024IL_5J7L_340:IL_5J7L_340 = 0IL_5J7L_340:IL_4PKD_001 = 0.1715IL_5J7L_340:IL_5TBW_132 = 0.2018IL_4PKD_001:IL_5UNE_008 = 0.4173IL_4PKD_001:IL_4V9F_087 = 0.3139IL_4PKD_001:IL_5TBW_108 = 0.2882IL_4PKD_001:IL_7A0S_089 = 0.2291IL_4PKD_001:IL_4WF9_095 = 0.1887IL_4PKD_001:IL_7RQB_097 = 0.1941IL_4PKD_001:IL_5J7L_340 = 0.1715IL_4PKD_001:IL_4PKD_001 = 0IL_4PKD_001:IL_5TBW_132 = 0.1435IL_5TBW_132:IL_5UNE_008 = 0.9344IL_5TBW_132:IL_4V9F_087 = 0.3739IL_5TBW_132:IL_5TBW_108 = 0.3567IL_5TBW_132:IL_7A0S_089 = 0.2863IL_5TBW_132:IL_4WF9_095 = 0.2343IL_5TBW_132:IL_7RQB_097 = 0.2679IL_5TBW_132:IL_5J7L_340 = 0.2018IL_5TBW_132:IL_4PKD_001 = 0.1435IL_5TBW_132:IL_5TBW_132 = 0IL_5UNE_008IL_4V9F_087IL_5TBW_108IL_7A0S_089IL_4WF9_095IL_7RQB_097IL_5J7L_340IL_4PKD_001IL_5TBW_132Discrepancy0.000.200.400.600.80
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