Motif IL_91481.1 Version IL_91481.1 of this group appears in releases 3.3 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 1-5 | 1-8 | 2-5 | 2-7 | 3-4 | 3-6 | 3-7 | 5-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4WF9_092 | 4WF9 | 0.7513 | 0 | Major groove minor groove platform with extra cWW | X | LSU rRNA | A | 2486 | U | 2487 | C | 2488 | * | G | 2516 | G | 2517 | U | 2518 | U | 2519 | U | 2520 | cWW | cwW | cWW | cSH | ||||
| 2 | IL_4V5O_149 | 4V5O | 0.6209 | 2 | BA | SSU rRNA | A | 1317 | A | 1320 | G | 1321 | * | C | 1346 | U | 1347 | U | 1348 | C | 1349 | U | 1350 | cWW | ncWW | cWW | ncSW | ncSH | ||||
| 3 | IL_4WF9_012 | 4WF9 | 0.3966 | 0 | Major groove minor groove platform with extra cWW | X | LSU rRNA | G | 304 | A | 305 | C | 306 | * | G | 409 | G | 410 | A | 411 | U | 412 | C | 413 | ncBW | ncWW | cWW | ncSW | ||||
| 4 | IL_4GXY_009 | 4GXY | 0.0000 | 0 | Major groove minor groove platform with extra cWW | A | Adenosylcobalamin riboswitch | C | 105 | A | 106 | C | 107 | * | G | 122 | G | 123 | A | 124 | A | 125 | G | 126 | cWW | ntHS | cWW | ntSH | ||||
| 5 | IL_4GMA_007 | 4GMA | 0.2607 | 0 | Z | Adenosylcobalamin riboswitch | C | 113 | A | 114 | C | 115 | * | G | 128 | G | 129 | A | 130 | A | 131 | G | 132 | cWW | cWW | ntSH | ||||||
| 6 | IL_4LFB_064 | 4LFB | 0.4994 | 1 | A | SSU rRNA | C | 1459 | A | 1460 | G | 1461 | * | C | 1440 | G | 1441 | G | 1442 | A | 1446 | G | 1447 | cWW | tHS | cWW | ||||||
| 7 | IL_5UNE_002 | 5UNE | 0.5721 | 1 | Isolated basepair with bulged bases | A+B | RNA (47-MER) | U | 10 | G | 11 | G | 12 | * | C | 33 | G | 34 | G | 35 | A | 37 | A | 38 | cWW | ntHS | cWW | |||||
| 8 | IL_4V5O_144 | 4V5O | 0.8361 | 2 | Minor groove platform with extra cWW (H) | BA | SSU rRNA | U | 1248 | G | 1249 | G | 1250 | * | U | 1401 | C | 1402 | G | 1404 | U | 1405 | A | 1407 | cWW | ncWB | cWW | |||||
| 9 | IL_4V88_451 | 4V88 | 0.8400 | 2 | Minor groove platform with extra cWW | A6 | SSU rRNA | U | 1276 | G | 1277 | G | 1278 | * | U | 1430 | C | 1431 | G | 1433 | U | 1434 | A | 1436 | cWW | ncWWa | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAC*GGAAG | 2 |
| UGG*UCUGUGA | 2 |
| AUC*GGUUU | 1 |
| ACUAG*CUUCU | 1 |
| GAC*GGAUC | 1 |
| CAG*CGGGAG | 1 |
| UGG*CGGAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*GAA | 2 |
| G*CUGUG | 2 |
| U*GUU | 1 |
| CUA*UUC | 1 |
| A*GAU | 1 |
| A*GGGA | 1 |
| G*GGAA | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 |
| Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Major groove minor groove platform with extra cWW (3)
- Minor groove platform with extra cWW (H) (1)
- Minor groove platform with extra cWW (1)
- Isolated basepair with bulged bases (1)
- Basepair signature
- cWW-R-R-tHS-cWW
- Heat map statistics
- Min 0.21 | Avg 0.65 | Max 1.00
Coloring options: