Motif IL_92440.1 Version IL_92440.1 of this group appears in releases 3.2 to 3.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 3-12 | 4-11 | 5-10 | 6-9 | 7-8 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V88_394 | 4V88 | 0.0000 | 1 | tWH-tWH-tHW-tHW | A6 | SSU rRNA | G | 143 | U | 144 | A | 145 | U | 146 | A | 147 | A | 148 | C | 149 | * | G | 165 | C | 166 | U | 167 | A | 168 | A | 169 | A | 171 | C | 172 | cWW | ncWW | tWH | tWH | tHW | tHW | cWW |
| 2 | IL_5J7L_012 | 5J7L | 0.1998 | 1 | tWH-tWH-tHW-tHW | AA | SSU rRNA | G | 147 | G | 148 | A | 149 | U | 150 | A | 151 | A | 152 | C | 153 | * | G | 168 | C | 169 | U | 170 | A | 171 | A | 172 | A | 174 | C | 175 | cWW | cWW | tWH | tWH | tHW | ntHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUAUAAC*GCUAAUAC | 1 |
| GGAUAAC*GCUAAUAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAUAA*CUAAUA | 1 |
| GAUAA*CUAAUA | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.2 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-09-26 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 |
| Status | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tWH-tWH-tHW-tHW (2)
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-tHW-cWW
- Heat map statistics
- Min 0.20 | Avg 0.10 | Max 0.20
Coloring options: