Motif IL_92936.1 Version IL_92936.1 of this group appears in releases 0.6 to 0.6
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-4 | 3-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1S72_053 | 1S72 | 0.0000 | 0 | 0 | LSU rRNA | A | 1465 | C | 1466 | C | 1467 | * | G | 1475 | A | 1476 | C | 1477 | U | 1478 | cWW | cWB | cWW | |
| 2 | IL_3U5F_028 | 3U5F | 0.3768 | 0 | 6 | 18S rRNA | G | 516 | U | 517 | A | 518 | * | U | 533 | A | 534 | A | 535 | C | 536 | cWW | ncWW | cWW | tSH |
| 3 | IL_3UXR_031 | 3UXR | 0.5015 | 0 | A | 23S ribosomal RNA | G | 875 | C | 876 | U | 877 | * | A | 899 | A | 900 | A | 901 | C | 902 | cWW | cWW | cWW | tSH |
| 4 | IL_2AW7_006 | 2AW7 | 0.6510 | 0 | A | 16S ribosomal RNA | C | 67 | G | 68 | G | 69 | * | C | 99 | G | 100 | A | 101 | G | 102 | cWW | cWW | cWW | tSH |
| 5 | IL_3U5F_068 | 3U5F | 0.8174 | 3 | 6 | 18S rRNA | U | 1276 | G | 1277 | G | 1278 | * | U | 1430 | G | 1433 | U | 1434 | A | 1436 | cWW | ncWWa | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACC*GACU | 1 |
| GUA*UAAC | 1 |
| GCU*AAAC | 1 |
| CGG*CGAG | 1 |
| UGG*UCUGUGA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| C*AC | 1 |
| U*AA | 1 |
| C*AA | 1 |
| G*GA | 1 |
| G*CUGUG | 1 |
Release history
| Release | 0.6 |
|---|---|
| Date | 2012-04-02 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_92936.1 | Only in the parent motif |
|---|---|---|---|
| IL_98615.1 Compare | IL_2AW7_006 | IL_1S72_053, IL_3U5F_028, IL_3UXR_031, IL_3U5F_068 | |
| IL_98047.1 Compare | IL_1S72_053 | IL_3U5F_028, IL_3UXR_031, IL_2AW7_006, IL_3U5F_068 | IL_3O30_007, IL_3O58_013, IL_2DER_001, IL_3O58_062, IL_3P49_006, IL_3P49_009 |
Children motifs
| Child motif | Common motif instances | Only in IL_92936.1 | Only in the child motif |
|---|---|---|---|
| IL_07911.1 Compare | IL_2AW7_006, IL_3U5F_028, IL_3U5F_068 | IL_3UXR_031, IL_1S72_053 | IL_3V2F_031, IL_3BNL_003 |
| IL_64184.2 Compare | IL_1S72_053 | IL_2AW7_006, IL_3U5F_028, IL_3UXR_031, IL_3U5F_068 | IL_3U5F_004, IL_2AW7_003, IL_1FJG_003 |
- Annotations
-
- (5)
- Basepair signature
- 07_cWW-cWW-cWW,tSH
- Heat map statistics
- Min 0.29 | Avg 0.42 | Max 0.82
Coloring options: