Motif IL_07911.1 Version IL_07911.1 of this group appears in releases 0.7 to 0.8
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-4 | 3-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5F_068 | 3U5F | 0.5804 | 3 | 6 | SSU rRNA | U | 1276 | G | 1277 | G | 1278 | * | U | 1430 | G | 1433 | U | 1434 | A | 1436 | cWW | ncWWa | cWW | tSH |
| 2 | IL_2AW7_006 | 2AW7 | 0.4335 | 0 | A | SSU rRNA | C | 67 | G | 68 | G | 69 | * | C | 99 | G | 100 | A | 101 | G | 102 | cWW | cWW | cWW | tSH |
| 3 | IL_3U5F_028 | 3U5F | 0.0000 | 0 | 6 | SSU rRNA | G | 516 | U | 517 | A | 518 | * | U | 533 | A | 534 | A | 535 | C | 536 | cWW | ncWW | cWW | tSH |
| 4 | IL_3V2F_031 | 3V2F | 0.3199 | 0 | A | LSU rRNA | G | 875 | C | 876 | U | 877 | * | A | 899 | A | 900 | A | 901 | C | 902 | cWW | ncWW | cWW | tSH |
| 5 | IL_3BNL_003 | 3BNL | 0.4950 | 0 | B+A | A site of bacterial ribosome | C | 6 | A | 7 | C | 8 | * | G | 15 | A | 16 | A | 17 | G | 18 | cWW | cwW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGG*UCUGUGA | 1 |
| CGG*CGAG | 1 |
| GUA*UAAC | 1 |
| GCU*AAAC | 1 |
| CAC*GAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*CUGUG | 1 |
| G*GA | 1 |
| U*AA | 1 |
| C*AA | 1 |
| A*AA | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_07911.1 | Only in the parent motif |
|---|---|---|---|
| IL_92936.1 Compare | IL_2AW7_006, IL_3U5F_028, IL_3U5F_068 | IL_3V2F_031, IL_3BNL_003 | IL_3UXR_031, IL_1S72_053 |
| IL_09390.1 Compare | IL_3BNL_003 | IL_3U5F_028, IL_3V2F_031, IL_2AW7_006, IL_3U5F_068 | IL_1S72_016 |
Children motifs
| Child motif | Common motif instances | Only in IL_07911.1 | Only in the child motif |
|---|---|---|---|
| IL_90133.1 Compare | IL_3U5F_028, IL_3V2F_031, IL_2AW7_006 | IL_3BNL_003, IL_3U5F_068 | IL_3U5F_004, IL_1S72_053 |
| IL_91132.1 Compare | IL_3BNL_003 | IL_3U5F_028, IL_3V2F_031, IL_2AW7_006, IL_3U5F_068 | IL_1S72_016 |
| IL_54420.1 Compare | IL_3U5F_068 | IL_3U5F_028, IL_3V2F_031, IL_2AW7_006, IL_3BNL_003 | IL_2XZM_067, IL_1FJG_063, IL_2XZM_073, IL_4GMA_007, IL_4GXY_009 |
- Annotations
-
- (5)
- Basepair signature
- cWW-cWW-tSH-cWW
- Heat map statistics
- Min 0.32 | Avg 0.39 | Max 0.58
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