Motif IL_64184.2 Version IL_64184.2 of this group appears in releases 0.7 to 0.8
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1FJG_003 | 1FJG | 0.3202 | 2 | A | SSU rRNA | C | 47 | U | 49 | A | 50 | G | 52 | * | U | 359 | A | 360 | G | 361 | cWW | cWW | |
| 2 | IL_2AW7_003 | 2AW7 | 0.3167 | 2 | A | 16S ribosomal RNA | C | 47 | U | 49 | A | 50 | C | 52 | * | G | 359 | G | 360 | G | 361 | cWW | tSs | cWW |
| 3 | IL_3U5F_004 | 3U5F | 0.0000 | 3 | 6 | 18S rRNA | G | 42 | U | 45 | A | 46 | G | 48 | * | C | 431 | G | 432 | C | 433 | cWW | ntSs | cWW |
| 4 | IL_1S72_053 | 1S72 | 0.9069 | 0 | 0 | LSU rRNA | G | 1475 | A | 1476 | C | 1477 | U | 1478 | * | A | 1465 | C | 1466 | C | 1467 | cWW | cBW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCUAAG*UAG | 1 |
| CCUAAC*GGG | 1 |
| GAUUAAG*CGC | 1 |
| GACU*ACC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUAA*A | 1 |
| CUAA*G | 1 |
| AUUAA*G | 1 |
| AC*C | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_64184.2 | Only in the parent motif |
|---|---|---|---|
| IL_64184.1 Compare | IL_3U5F_004, IL_2AW7_003, IL_1FJG_003 | IL_1S72_053 | |
| IL_92936.1 Compare | IL_1S72_053 | IL_3U5F_004, IL_2AW7_003, IL_1FJG_003 | IL_2AW7_006, IL_3U5F_028, IL_3UXR_031, IL_3U5F_068 |
Children motifs
| Child motif | Common motif instances | Only in IL_64184.2 | Only in the child motif |
|---|---|---|---|
| IL_90133.1 Compare | IL_3U5F_004, IL_1S72_053 | IL_2AW7_003, IL_1FJG_003 | IL_3U5F_028, IL_3V2F_031, IL_2AW7_006 |
| IL_95150.3 Compare | IL_1FJG_003 | IL_3U5F_004, IL_2AW7_003, IL_1S72_053 | IL_3OWZ_006, IL_3OWZ_002 |
| IL_98688.1 Compare | IL_2AW7_003 | IL_3U5F_004, IL_1FJG_003, IL_1S72_053 |
- Annotations
-
- (4)
- Basepair signature
- cWW-L-R-L-cWW
- Heat map statistics
- Min 0.31 | Avg 0.47 | Max 0.98
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