Motif IL_93341.1 Version IL_93341.1 of this group appears in releases 3.77 to 3.87

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8	1-8	2-7	3-4	3-5	4-7	5-6
1	IL_7ENI_001	7ENI	0.4067		B	sgRNA (74-MER)	A	42	A	43	U	44	C	45	U	46	*	A	29	C	30	U	31	cWW		ncSH		ncwW	cWW
2	IL_7EL1_001	7EL1	0.3951		B	RNA (73-MER)	A	42	A	43	U	44	C	45	U	46	*	A	29	C	30	U	31	cWW	ncWWa			ncwW	cWW
3	IL_6M0X_001	6M0X	0.3588		B	RNA (71-MER)	A	38	A	39	G	40	C	41	U	42	*	A	29	C	30	U	31	cWW	ncWWa		ncSH	ncwW	cWW
4	IL_6DLR_002	6DLR	0.0000	8-nt loop receptor	A	Guanidine-I riboswitch	G	16	G	17	U	18	U	19	C	20	*	G	42	U	43	C	44	cWW	cWB	ncSH	cSH	ncWw	cWW
5	IL_7MLW_003	7MLW	0.0974		F	Guanidine-I riboswitch	G	11	G	12	U	13	U	14	C	15	*	G	48	U	49	C	50	cWW	cWB	cSH	cSH		cWW
6	IL_5U3G_002	5U3G	0.1234	8-nt loop receptor	B	Guanidine-I riboswitch	G	10	G	11	U	12	U	13	C	14	*	G	27	U	28	C	29	cWW	cWB		cSH	ncWw	cWW
7	IL_5T83_002	5T83	0.1341	8-nt loop receptor	A	Guanidine-I riboswitch	G	16	G	17	U	18	U	19	C	20	*	G	39	U	40	C	41	cWW	ncWB	cSH	ncSH		cWW
8	IL_6DME_002	6DME	0.2457	8-nt loop receptor	A	ppGpp Riboswitch	G	15	G	16	A	17	U	18	C	19	*	G	37	A	38	C	39	cWW	cWW	ncSH	ncSH	tHS	cWW
9	IL_6CK5_002	6CK5	0.2641	8-nt loop receptor	A	Guanidine-I riboswitch	G	16	G	17	U	18	U	19	C	20	*	G	42	A	43	C	44	cWW	cWW	cSH	cSH	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GGUUC*GUC	4
AAUCU*ACU	2
AAGCU*ACU	1
GGAUC*GAC	1
GGUUC*GAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
GUU*U	4
AUC*C	2
AGC*C	1
GAU*A	1
GUU*A	1

Release history

Release	3.77	3.78	3.79	3.80	3.81	3.82	3.83	3.84	3.85	3.86	3.87
Date	2023-12-06	2024-01-03	2024-01-03	2024-01-31	2024-02-28	2024-03-27	2024-04-24	2024-05-22	2024-06-19	2024-07-17	2024-08-14
Status	New id, 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: 8-nt loop receptor (5)
(4)
Basepair signature: cWW-cWW-cSH-cSH-cWW
Heat map statistics: Min 0.10 | Avg 0.25 | Max 0.41

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