Motif IL_93341.1 Version IL_93341.1 of this group appears in releases 3.77 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 1-8 | 2-7 | 3-4 | 3-5 | 4-7 | 5-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7ENI_001 | 7ENI | 0.4067 | 0 | B | sgRNA (74-MER) | A | 42 | A | 43 | U | 44 | C | 45 | U | 46 | * | A | 29 | C | 30 | U | 31 | cWW | ncSH | ncwW | cWW | |||
| 2 | IL_7EL1_001 | 7EL1 | 0.3951 | 0 | B | RNA (73-MER) | A | 42 | A | 43 | U | 44 | C | 45 | U | 46 | * | A | 29 | C | 30 | U | 31 | cWW | ncWWa | ncwW | cWW | |||
| 3 | IL_6M0X_001 | 6M0X | 0.3588 | 0 | B | RNA (71-MER) | A | 38 | A | 39 | G | 40 | C | 41 | U | 42 | * | A | 29 | C | 30 | U | 31 | cWW | ncWWa | ncSH | ncwW | cWW | ||
| 4 | IL_6DLR_002 | 6DLR | 0.0000 | 0 | 8-nt loop receptor | A | Guanidine-I riboswitch | G | 16 | G | 17 | U | 18 | U | 19 | C | 20 | * | G | 42 | U | 43 | C | 44 | cWW | cWB | ncSH | cSH | ncWw | cWW |
| 5 | IL_7MLW_003 | 7MLW | 0.0974 | 0 | F | Guanidine-I riboswitch | G | 11 | G | 12 | U | 13 | U | 14 | C | 15 | * | G | 48 | U | 49 | C | 50 | cWW | cWB | cSH | cSH | cWW | ||
| 6 | IL_5U3G_002 | 5U3G | 0.1234 | 0 | 8-nt loop receptor | B | Guanidine-I riboswitch | G | 10 | G | 11 | U | 12 | U | 13 | C | 14 | * | G | 27 | U | 28 | C | 29 | cWW | cWB | cSH | ncWw | cWW | |
| 7 | IL_5T83_002 | 5T83 | 0.1341 | 0 | 8-nt loop receptor | A | Guanidine-I riboswitch | G | 16 | G | 17 | U | 18 | U | 19 | C | 20 | * | G | 39 | U | 40 | C | 41 | cWW | ncWB | cSH | ncSH | cWW | |
| 8 | IL_6DME_002 | 6DME | 0.2457 | 0 | 8-nt loop receptor | A | ppGpp Riboswitch | G | 15 | G | 16 | A | 17 | U | 18 | C | 19 | * | G | 37 | A | 38 | C | 39 | cWW | cWW | ncSH | ncSH | tHS | cWW |
| 9 | IL_6CK5_002 | 6CK5 | 0.2641 | 0 | 8-nt loop receptor | A | Guanidine-I riboswitch | G | 16 | G | 17 | U | 18 | U | 19 | C | 20 | * | G | 42 | A | 43 | C | 44 | cWW | cWW | cSH | cSH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUUC*GUC | 4 |
| AAUCU*ACU | 2 |
| AAGCU*ACU | 1 |
| GGAUC*GAC | 1 |
| GGUUC*GAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUU*U | 4 |
| AUC*C | 2 |
| AGC*C | 1 |
| GAU*A | 1 |
| GUU*A | 1 |
Release history
| Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- 8-nt loop receptor (5)
- (4)
- Basepair signature
- cWW-cWW-cSH-cSH-cWW
- Heat map statistics
- Min 0.10 | Avg 0.25 | Max 0.41
Coloring options: