#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5break 6 7 81-82-73-43-54-75-6
1 IL_7ENI_0017ENI0.40670BsgRNA (74-MER)A42A43U44C45U46*A29C30U31cWWncSHncwWcWW
2 IL_7EL1_0017EL10.39510BRNA (73-MER)A42A43U44C45U46*A29C30U31cWWncWWancwWcWW
3 IL_6M0X_0016M0X0.35880BRNA (71-MER)A38A39G40C41U42*A29C30U31cWWncWWancSHncwWcWW
4 IL_6DLR_0026DLR0.000008-nt loop receptorAGuanidine-I riboswitchG16G17U18U19C20*G42U43C44cWWcWBncSHcSHncWwcWW
5 IL_7MLW_0037MLW0.09740FGuanidine-I riboswitchG11G12U13U14C15*G48U49C50cWWcWBcSHcSHcWW
6 IL_5U3G_0025U3G0.123408-nt loop receptorBGuanidine-I riboswitchG10G11U12U13C14*G27U28C29cWWcWBcSHncWwcWW
7 IL_5T83_0025T830.134108-nt loop receptorAGuanidine-I riboswitchG16G17U18U19C20*G39U40C41cWWncWBcSHncSHcWW
8 IL_6DME_0026DME0.245708-nt loop receptorAppGpp RiboswitchG15G16A17U18C19*G37A38C39cWWcWWncSHncSHtHScWW
9 IL_6CK5_0026CK50.264108-nt loop receptorAGuanidine-I riboswitchG16G17U18U19C20*G42A43C44cWWcWWcSHcSHtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
GGUUC*GUC4
AAUCU*ACU2
AAGCU*ACU1
GGAUC*GAC1
GGUUC*GAC1
Non-Watson-Crick part of the motif
SequenceCounts
GUU*U4
AUC*C2
AGC*C1
GAU*A1
GUU*A1

Release history

Release3.773.783.793.803.813.823.833.843.853.863.87
Date2023-12-062024-01-032024-01-032024-01-312024-02-282024-03-272024-04-242024-05-222024-06-192024-07-172024-08-14
StatusNew id, 2 parentsExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • 8-nt loop receptor (5)
  • (4)
  • Basepair signature
    cWW-cWW-cSH-cSH-cWW
    Heat map statistics
    Min 0.10 | Avg 0.25 | Max 0.41
    Help

    Coloring options:

    IL_7ENI_001:IL_7ENI_001 = 0IL_7ENI_001:IL_7EL1_001 = 0.1029IL_7ENI_001:IL_6M0X_001 = 0.2121IL_7ENI_001:IL_6DLR_002 = 0.4067IL_7ENI_001:IL_7MLW_003 = 0.4112IL_7ENI_001:IL_5U3G_002 = 0.4091IL_7ENI_001:IL_5T83_002 = 0.3688IL_7ENI_001:IL_6DME_002 = 0.3506IL_7ENI_001:IL_6CK5_002 = 0.4018IL_7EL1_001:IL_7ENI_001 = 0.1029IL_7EL1_001:IL_7EL1_001 = 0IL_7EL1_001:IL_6M0X_001 = 0.1593IL_7EL1_001:IL_6DLR_002 = 0.3951IL_7EL1_001:IL_7MLW_003 = 0.3974IL_7EL1_001:IL_5U3G_002 = 0.3906IL_7EL1_001:IL_5T83_002 = 0.3592IL_7EL1_001:IL_6DME_002 = 0.3615IL_7EL1_001:IL_6CK5_002 = 0.4077IL_6M0X_001:IL_7ENI_001 = 0.2121IL_6M0X_001:IL_7EL1_001 = 0.1593IL_6M0X_001:IL_6M0X_001 = 0IL_6M0X_001:IL_6DLR_002 = 0.3588IL_6M0X_001:IL_7MLW_003 = 0.3783IL_6M0X_001:IL_5U3G_002 = 0.3707IL_6M0X_001:IL_5T83_002 = 0.3587IL_6M0X_001:IL_6DME_002 = 0.3714IL_6M0X_001:IL_6CK5_002 = 0.4064IL_6DLR_002:IL_7ENI_001 = 0.4067IL_6DLR_002:IL_7EL1_001 = 0.3951IL_6DLR_002:IL_6M0X_001 = 0.3588IL_6DLR_002:IL_6DLR_002 = 0IL_6DLR_002:IL_7MLW_003 = 0.0974IL_6DLR_002:IL_5U3G_002 = 0.1234IL_6DLR_002:IL_5T83_002 = 0.1341IL_6DLR_002:IL_6DME_002 = 0.2457IL_6DLR_002:IL_6CK5_002 = 0.2641IL_7MLW_003:IL_7ENI_001 = 0.4112IL_7MLW_003:IL_7EL1_001 = 0.3974IL_7MLW_003:IL_6M0X_001 = 0.3783IL_7MLW_003:IL_6DLR_002 = 0.0974IL_7MLW_003:IL_7MLW_003 = 0IL_7MLW_003:IL_5U3G_002 = 0.1213IL_7MLW_003:IL_5T83_002 = 0.1326IL_7MLW_003:IL_6DME_002 = 0.247IL_7MLW_003:IL_6CK5_002 = 0.2686IL_5U3G_002:IL_7ENI_001 = 0.4091IL_5U3G_002:IL_7EL1_001 = 0.3906IL_5U3G_002:IL_6M0X_001 = 0.3707IL_5U3G_002:IL_6DLR_002 = 0.1234IL_5U3G_002:IL_7MLW_003 = 0.1213IL_5U3G_002:IL_5U3G_002 = 0IL_5U3G_002:IL_5T83_002 = 0.1022IL_5U3G_002:IL_6DME_002 = 0.2352IL_5U3G_002:IL_6CK5_002 = 0.2658IL_5T83_002:IL_7ENI_001 = 0.3688IL_5T83_002:IL_7EL1_001 = 0.3592IL_5T83_002:IL_6M0X_001 = 0.3587IL_5T83_002:IL_6DLR_002 = 0.1341IL_5T83_002:IL_7MLW_003 = 0.1326IL_5T83_002:IL_5U3G_002 = 0.1022IL_5T83_002:IL_5T83_002 = 0IL_5T83_002:IL_6DME_002 = 0.1928IL_5T83_002:IL_6CK5_002 = 0.2316IL_6DME_002:IL_7ENI_001 = 0.3506IL_6DME_002:IL_7EL1_001 = 0.3615IL_6DME_002:IL_6M0X_001 = 0.3714IL_6DME_002:IL_6DLR_002 = 0.2457IL_6DME_002:IL_7MLW_003 = 0.247IL_6DME_002:IL_5U3G_002 = 0.2352IL_6DME_002:IL_5T83_002 = 0.1928IL_6DME_002:IL_6DME_002 = 0IL_6DME_002:IL_6CK5_002 = 0.1284IL_6CK5_002:IL_7ENI_001 = 0.4018IL_6CK5_002:IL_7EL1_001 = 0.4077IL_6CK5_002:IL_6M0X_001 = 0.4064IL_6CK5_002:IL_6DLR_002 = 0.2641IL_6CK5_002:IL_7MLW_003 = 0.2686IL_6CK5_002:IL_5U3G_002 = 0.2658IL_6CK5_002:IL_5T83_002 = 0.2316IL_6CK5_002:IL_6DME_002 = 0.1284IL_6CK5_002:IL_6CK5_002 = 0IL_7ENI_001IL_7EL1_001IL_6M0X_001IL_6DLR_002IL_7MLW_003IL_5U3G_002IL_5T83_002IL_6DME_002IL_6CK5_002Discrepancy0.000.100.200.300.40
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