#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5break 6 7 81-82-52-73-43-53-74-75-6
1 IL_6CZR_3616CZR0.441601a SSU rRNAG623A624U625A626C627*G581U582C583cWWncWWncSHcWW
2 IL_7ENI_0017ENI0.36880BsgRNA (74-MER)A42A43U44C45U46*A29C30U31cWWncSHncwWcWW
3 IL_7EL1_0017EL10.35920BRNA (73-MER)A42A43U44C45U46*A29C30U31cWWncWWancwWcWW
4 IL_6M0X_0016M0X0.35870BRNA (71-MER)A38A39G40C41U42*A29C30U31cWWncWWancSHncwWcWW
5 IL_6DLR_0026DLR0.134108-nt loop receptorAGuanidine-I riboswitchG16G17U18U19C20*G42U43C44cWWcWBncSHcSHncWwcWW
6 IL_7MLW_0037MLW0.13260FGuanidine-I riboswitchG11G12U13U14C15*G48U49C50cWWcWBcSHcSHcWW
7 IL_5U3G_0025U3G0.102208-nt loop receptorBGuanidine-I riboswitchG10G11U12U13C14*G27U28C29cWWcWBcSHncWwcWW
8 IL_5T83_0025T830.000008-nt loop receptorAGuanidine-I riboswitchG16G17U18U19C20*G39U40C41cWWncWBcSHncSHcWW
9 IL_6DME_0026DME0.192808-nt loop receptorAppGpp RiboswitchG15G16A17U18C19*G37A38C39cWWcWWncSHncSHtHScWW
10 IL_6CK5_0026CK50.231608-nt loop receptorAGuanidine-I riboswitchG16G17U18U19C20*G42A43C44cWWcWWcSHcSHtHScWW
11 IL_7MLW_0097MLW0.70380FGuanidine-I riboswitchU43G44C45U46G47*C16G17G18cWWcWHncSHcWWtHScWW
12 IL_6DLR_0066DLR0.71651AGuanidine-I riboswitchG36G37C39U40G41*C21G22C23cWWcWHcSHcWWtHScWW
13 IL_5T83_0065T830.75941AGuanidine-I riboswitchG33G34C36U37G38*C21G22C23cWWcWHncSHcWWntHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
GGUUC*GUC4
AAUCU*ACU2
GAUAC*GUC1
AAGCU*ACU1
GGAUC*GAC1
GGUUC*GAC1
UGCUG*CGG1
GGACUG*CGC1
GGUCUG*CGC1
Non-Watson-Crick part of the motif
SequenceCounts
GUU*U4
AUC*C2
AUA*U1
AGC*C1
GAU*A1
GUU*A1
GCU*G1
GACU*G1
GUCU*G1

Release history

Release3.88
Date2024-09-11
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (8)
  • 8-nt loop receptor (5)
  • Basepair signature
    cWW-L-R-cSH-cSH-cWW
    Heat map statistics
    Min 0.10 | Avg 0.45 | Max 0.94
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 0.4646 s