Motif IL_93341.4 Version IL_93341.4 of this group appears in releases 3.90 to 3.92
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 1-8 | 2-5 | 2-7 | 3-4 | 3-5 | 3-7 | 4-7 | 5-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5T83_006 | 5T83 | 0.7483 | 1 | A | Guanidine-I riboswitch | G | 33 | G | 34 | C | 36 | U | 37 | G | 38 | * | C | 21 | G | 22 | C | 23 | cWW | cWH | ncSH | cWW | ntHS | cWW | |||
| 2 | IL_6DLR_006 | 6DLR | 0.6947 | 1 | A | Guanidine-I riboswitch | G | 36 | G | 37 | C | 39 | U | 40 | G | 41 | * | C | 21 | G | 22 | C | 23 | cWW | cWH | cSH | cWW | tHS | cWW | |||
| 3 | IL_7MLW_009 | 7MLW | 0.6817 | 0 | F | Guanidine-I riboswitch | U | 43 | G | 44 | C | 45 | U | 46 | G | 47 | * | C | 16 | G | 17 | G | 18 | cWW | cWH | ncSH | cWW | tHS | cWW | |||
| 4 | IL_7MLW_003 | 7MLW | 0.0000 | 0 | F | Guanidine-I riboswitch | G | 11 | G | 12 | U | 13 | U | 14 | C | 15 | * | G | 48 | U | 49 | C | 50 | cWW | cWB | cSH | cSH | cWW | ||||
| 5 | IL_6DLR_002 | 6DLR | 0.0974 | 0 | 8-nt loop receptor | A | Guanidine-I riboswitch | G | 16 | G | 17 | U | 18 | U | 19 | C | 20 | * | G | 42 | U | 43 | C | 44 | cWW | cWB | ncSH | cSH | ncWw | cWW | ||
| 6 | IL_5U3G_002 | 5U3G | 0.1213 | 0 | 8-nt loop receptor | B | Guanidine-I riboswitch | G | 10 | G | 11 | U | 12 | U | 13 | C | 14 | * | G | 27 | U | 28 | C | 29 | cWW | cWB | cSH | ncWw | cWW | |||
| 7 | IL_5T83_002 | 5T83 | 0.1326 | 0 | 8-nt loop receptor | A | Guanidine-I riboswitch | G | 16 | G | 17 | U | 18 | U | 19 | C | 20 | * | G | 39 | U | 40 | C | 41 | cWW | ncWB | cSH | ncSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUUC*GUC | 4 |
| GGUCUG*CGC | 1 |
| GGACUG*CGC | 1 |
| UGCUG*CGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUU*U | 4 |
| GUCU*G | 1 |
| GACU*G | 1 |
| GCU*G | 1 |
- Annotations
-
- (4)
- 8-nt loop receptor (3)
- Basepair signature
- cWW-L-R-cSH-cSH-cWW
- Heat map statistics
- Min 0.10 | Avg 0.40 | Max 0.76
Coloring options: