Motif IL_93341.4 Version IL_93341.4 of this group appears in releases 3.90 to 3.92

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8	1-8	2-5	2-7	3-4	3-5	3-7	4-7	5-6
1	IL_5T83_006	5T83	0.7483	1		A	Guanidine-I riboswitch	G	33	G	34	C	36	U	37	G	38	*	C	21	G	22	C	23	cWW	cWH		ncSH		cWW	ntHS	cWW
2	IL_6DLR_006	6DLR	0.6947	1		A	Guanidine-I riboswitch	G	36	G	37	C	39	U	40	G	41	*	C	21	G	22	C	23	cWW	cWH		cSH		cWW	tHS	cWW
3	IL_7MLW_009	7MLW	0.6817	0		F	Guanidine-I riboswitch	U	43	G	44	C	45	U	46	G	47	*	C	16	G	17	G	18	cWW	cWH		ncSH		cWW	tHS	cWW
4	IL_7MLW_003	7MLW	0.0000	0		F	Guanidine-I riboswitch	G	11	G	12	U	13	U	14	C	15	*	G	48	U	49	C	50	cWW		cWB	cSH	cSH			cWW
5	IL_6DLR_002	6DLR	0.0974	0	8-nt loop receptor	A	Guanidine-I riboswitch	G	16	G	17	U	18	U	19	C	20	*	G	42	U	43	C	44	cWW		cWB	ncSH	cSH		ncWw	cWW
6	IL_5U3G_002	5U3G	0.1213	0	8-nt loop receptor	B	Guanidine-I riboswitch	G	10	G	11	U	12	U	13	C	14	*	G	27	U	28	C	29	cWW		cWB		cSH		ncWw	cWW
7	IL_5T83_002	5T83	0.1326	0	8-nt loop receptor	A	Guanidine-I riboswitch	G	16	G	17	U	18	U	19	C	20	*	G	39	U	40	C	41	cWW		ncWB	cSH	ncSH			cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GGUUC*GUC	4
GGUCUG*CGC	1
GGACUG*CGC	1
UGCUG*CGG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GUU*U	4
GUCU*G	1
GACU*G	1
GCU*G	1

Release history

Release	3.90	3.91	3.92
Date	2024-11-06	2024-12-04	2025-01-01
Status	Updated, 1 parent	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (4)
8-nt loop receptor (3)
Basepair signature: cWW-L-R-cSH-cSH-cWW
Heat map statistics: Min 0.10 | Avg 0.40 | Max 0.76

Help

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view

reading 564 atoms

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3 models in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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564 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 37 ms

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Coloring options: Nucleotide numbers

Motif IL_93341.4 Version IL_93341.4 of this group appears in releases 3.90 to 3.92 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_93341.4 Version IL_93341.4 of this group appears in releases 3.90 to 3.92

Download

Csv

Json