Motif IL_93571.1 Version IL_93571.1 of this group appears in releases 3.89 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 1-15 | 2-14 | 3-14 | 7-10 | 7-11 | 8-9 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7JNH_001 | 7JNH | 0.0000 | 0 | B | Core double ENE RNA (Xtal construct) from Oryza sativa transposon | G | 8 | U | 9 | U | 10 | U | 11 | U | 12 | U | 13 | A | 14 | C | 15 | * | G | 73 | G | 74 | U | 75 | U | 76 | U | 77 | U | 78 | C | 79 | cWW | cWW | cWW | |||
| 2 | IL_6VMY_004 | 6VMY | 0.6912 | 0 | A | Cobalamin riboswitch | C | 326 | A | 327 | C | 328 | G | 329 | A | 330 | A | 331 | U | 332 | U | 333 | * | A | 342 | C | 343 | A | 344 | G | 345 | A | 346 | U | 347 | G | 348 | cWW | ntHH | ncWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUUUUAC*GGUUUUC | 1 |
| CACGAAUU*ACAGAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUUUUA*GUUUU | 1 |
| ACGAAU*CAGAU | 1 |
- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-cWW
- Heat map statistics
- Min 0.69 | Avg 0.35 | Max 0.69
Coloring options: