Motif IL_94431.1 Version IL_94431.1 of this group appears in releases 3.2 to 3.11

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4	break		5		6	1-2	1-6	3-6	4-5
1	IL_5J7L_043	5J7L	0.5402	1	Minor groove platform	AA	SSU rRNA	G	993	C	995	A	996	U	997	*	A	1044	C	1045		cWW	cWS	cWW
2	IL_4LFB_039	4LFB	0.5026	1	Minor groove platform	A	SSU rRNA	G	993	C	995	A	996	U	997	*	A	1044	C	1045		cWW	cWS	cWW
3	IL_5J7L_007	5J7L	0.3791	0	Minor groove platform	AA	SSU rRNA	U	70	A	71	A	72	C	73	*	G	97	A	98	ncSH	cWW	ncWS	cWW
4	IL_5J7L_052	5J7L	0.3644	0	Minor groove platform	AA	SSU rRNA	C	1129	A	1130	G	1131	C	1132	*	G	1142	G	1143	cSH	cWW		cWW
5	IL_4LFB_049	4LFB	0.3320	1	Minor groove platform	A	SSU rRNA	C	1128	A	1130	G	1131	C	1132	*	G	1142	G	1143		cWW	ncWS	ncWW
6	IL_3MXH_005	3MXH	0.1558	0	Minor groove platform	R	c-di-GMP riboswitch	A	61	A	62	A	63	C	64	*	G	76	U	77	ncSH	cWW		cWW
7	IL_3IWN_005	3IWN	0.0000	0	Minor groove platform	A	C-di-GMP riboswitch	A	51	A	52	A	53	C	54	*	G	71	U	72	ncSH	cWW	ncWS	cWW
8	IL_5J7L_041	5J7L	0.3878	2	Minor groove platform	AA	SSU rRNA	U	1380	C	1382	C	1383	C	1384	*	G	933	A	935	ncSH	cWW	cWS	cWW
9	IL_4LFB_037	4LFB	0.4055	2	Minor groove platform	A	SSU rRNA	U	1380	C	1382	C	1383	C	1384	*	G	933	A	935		cWW	cWS	cWW
10	IL_4V8P_224	4V8P	0.3681	2		D1	LSU rRNA	A	1527	A	1529	A	1530	C	1531	*	G	1539	U	1541		cWW	cWS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GACAU*AC	2
AAAC*GU	2
UUCCC*GCA	2
UAAC*GA	1
CAGC*GG	1
CCAGC*GG	1
AGAAC*GUU	1

Non-Watson-Crick part of the motif

Sequence	Counts
AA*	3
ACA*	2
UCC*C	2
AG*	1
CAG*	1
GAA*U	1

Release history

Release	3.3	3.4	3.5	3.6	3.7	3.8	3.9	3.10	3.2	3.11
Date	2018-03-08	2018-04-06	2018-05-04	2018-06-01	2018-06-29	2018-07-27	2018-08-24	2018-09-21	2018-09-26	2018-10-19
Status	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	New id, no parents	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Minor groove platform (9)
(1)
Basepair signature: cWW-cSH-cWS-cWW
Heat map statistics: Min 0.08 | Avg 0.39 | Max 0.69

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