Motif IL_94431.2 Version IL_94431.2 of this group appears in releases 3.12 to 3.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 1-2 | 1-6 | 3-6 | 4-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4LFB_037 | 4LFB | 0.4653 | 2 | Minor groove platform | A | SSU rRNA | U | 1380 | C | 1382 | C | 1383 | C | 1384 | * | G | 933 | A | 935 | cWW | cWS | cWW | |
| 2 | IL_5J7L_041 | 5J7L | 0.4405 | 2 | Minor groove platform | AA | SSU rRNA | U | 1380 | C | 1382 | C | 1383 | C | 1384 | * | G | 933 | A | 935 | ncSH | cWW | cWS | cWW |
| 3 | IL_3IWN_005 | 3IWN | 0.1558 | 0 | Minor groove platform | A | C-di-GMP riboswitch | A | 51 | A | 52 | A | 53 | C | 54 | * | G | 71 | U | 72 | ncSH | cWW | ncWS | cWW |
| 4 | IL_3MXH_005 | 3MXH | 0.0000 | 0 | Minor groove platform | R | c-di-GMP riboswitch | A | 61 | A | 62 | A | 63 | C | 64 | * | G | 76 | U | 77 | ncSH | cWW | cWW | |
| 5 | IL_4LFB_049 | 4LFB | 0.3032 | 1 | Minor groove platform | A | SSU rRNA | C | 1128 | A | 1130 | G | 1131 | C | 1132 | * | G | 1142 | G | 1143 | cWW | ncWS | ncWW | |
| 6 | IL_5J7L_052 | 5J7L | 0.3089 | 0 | Minor groove platform | AA | SSU rRNA | C | 1129 | A | 1130 | G | 1131 | C | 1132 | * | G | 1142 | G | 1143 | cSH | cWW | cWW | |
| 7 | IL_5J7L_007 | 5J7L | 0.3352 | 0 | Minor groove platform | AA | SSU rRNA | U | 70 | A | 71 | A | 72 | C | 73 | * | G | 97 | A | 98 | ncSH | cWW | ncWS | cWW |
| 8 | IL_4LFB_039 | 4LFB | 0.4872 | 1 | Minor groove platform | A | SSU rRNA | G | 993 | C | 995 | A | 996 | U | 997 | * | A | 1044 | C | 1045 | cWW | cWS | cWW | |
| 9 | IL_5J7L_043 | 5J7L | 0.5256 | 1 | Minor groove platform | AA | SSU rRNA | G | 993 | C | 995 | A | 996 | U | 997 | * | A | 1044 | C | 1045 | cWW | cWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUCCC*GCA | 2 |
| AAAC*GU | 2 |
| GACAU*AC | 2 |
| CCAGC*GG | 1 |
| CAGC*GG | 1 |
| UAAC*GA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA* | 3 |
| UCC*C | 2 |
| ACA* | 2 |
| CAG* | 1 |
| AG* | 1 |
- Annotations
-
- Minor groove platform (9)
- Basepair signature
- cWW-cSH-cWS-cWW
- Heat map statistics
- Min 0.08 | Avg 0.36 | Max 0.54
Coloring options: