Motif IL_94431.4 Version IL_94431.4 of this group appears in releases 3.48 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 1-2 | 1-6 | 3-6 | 4-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5TBW_374 | 5TBW | 0.5097 | 0 | Minor groove platform | AS | 5S rRNA | G | 49 | U | 50 | A | 51 | G | 52 | * | C | 28 | C | 29 | cWW | cWS | cWW | |
| 2 | IL_4LFB_037 | 4LFB | 0.4653 | 2 | Minor groove platform | A | SSU rRNA | U | 1380 | C | 1382 | C | 1383 | C | 1384 | * | G | 933 | A | 935 | cWW | cWS | cWW | |
| 3 | IL_5J7L_041 | 5J7L | 0.4405 | 2 | Minor groove platform | AA | SSU rRNA | U | 1380 | C | 1382 | C | 1383 | C | 1384 | * | G | 933 | A | 935 | ncSH | cWW | cWS | cWW |
| 4 | IL_3IWN_005 | 3IWN | 0.1558 | 0 | Minor groove platform | A | C-di-GMP riboswitch | A | 51 | A | 52 | A | 53 | C | 54 | * | G | 71 | U | 72 | ncSH | cWW | ncWS | cWW |
| 5 | IL_3MXH_005 | 3MXH | 0.0000 | 0 | Minor groove platform | R | c-di-GMP riboswitch | A | 61 | A | 62 | A | 63 | C | 64 | * | G | 76 | U | 77 | ncSH | cWW | cWW | |
| 6 | IL_4LFB_049 | 4LFB | 0.3032 | 1 | Minor groove platform | A | SSU rRNA | C | 1128 | A | 1130 | G | 1131 | C | 1132 | * | G | 1142 | G | 1143 | cWW | ncWS | ncWW | |
| 7 | IL_5J7L_052 | 5J7L | 0.3089 | 0 | Minor groove platform | AA | SSU rRNA | C | 1129 | A | 1130 | G | 1131 | C | 1132 | * | G | 1142 | G | 1143 | cSH | cWW | cWW | |
| 8 | IL_5J7L_007 | 5J7L | 0.3352 | 0 | Minor groove platform | AA | SSU rRNA | U | 70 | A | 71 | A | 72 | C | 73 | * | G | 97 | A | 98 | ncSH | cWW | ncWS | cWW |
| 9 | IL_4LFB_039 | 4LFB | 0.4872 | 1 | Minor groove platform | A | SSU rRNA | G | 993 | C | 995 | A | 996 | U | 997 | * | A | 1044 | C | 1045 | cWW | cWS | cWW | |
| 10 | IL_5J7L_043 | 5J7L | 0.5256 | 1 | Minor groove platform | AA | SSU rRNA | G | 993 | C | 995 | A | 996 | U | 997 | * | A | 1044 | C | 1045 | cWW | cWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUCCC*GCA | 2 |
| AAAC*GU | 2 |
| GACAU*AC | 2 |
| GUAG*CC | 1 |
| CCAGC*GG | 1 |
| CAGC*GG | 1 |
| UAAC*GA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA* | 3 |
| UCC*C | 2 |
| ACA* | 2 |
| UA* | 1 |
| CAG* | 1 |
| AG* | 1 |
Release history
| Release | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2021-08-18 | 2021-09-15 | 2021-10-13 | 2021-11-10 | 2021-12-08 | 2022-01-05 | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Minor groove platform (10)
- Basepair signature
- cWW-cSH-cWS-cWW
- Heat map statistics
- Min 0.08 | Avg 0.39 | Max 0.63
Coloring options: