Motif IL_94518.1 Version IL_94518.1 of this group appears in releases 3.2 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-9 | 4-10 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4WF9_058 | 4WF9 | 0.7415 | 1 | X | LSU rRNA | G | 1564 | U | 1565 | G | 1566 | A | 1567 | U | 1568 | G | 1570 | * | C | 1511 | U | 1512 | A | 1513 | A | 1514 | G | 1515 | C | 1516 | cWW | ncWWa | ntSH | ncSW | cWW | |||
| 2 | IL_1D4R_002 | 1D4R | 0.4315 | 0 | Other IL | B+A | 29-MER OF MODIFIED SRP RNA HELIX 6 | G | 12 | G | 13 | G | 14 | A | 15 | G | 16 | C | 17 | * | G | 12 | G | 13 | G | 14 | A | 15 | G | 16 | C | 17 | cWW | cBW | cWB | cWW | |||
| 3 | IL_5J7L_034 | 5J7L | 0.0647 | 0 | AA | SSU rRNA | A | 712 | G | 713 | G | 714 | A | 715 | A | 716 | U | 717 | * | A | 673 | G | 674 | A | 675 | A | 676 | U | 677 | U | 678 | cWW | ncWWa | cWW | ncwW | cWW | cWW | ||
| 4 | IL_4LFB_030 | 4LFB | 0.0000 | 0 | A | SSU rRNA | A | 712 | G | 713 | G | 714 | A | 715 | A | 716 | C | 717 | * | G | 673 | G | 674 | A | 675 | A | 676 | U | 677 | U | 678 | cWW | ncWWa | cWW | ncwW | cWW | cWW | ||
| 5 | IL_4N0T_001 | 4N0T | 0.6769 | 0 | Double sheared; A in syn; two near cWW pairs | B | U6 snRNA | G | 31 | U | 32 | C | 33 | A | 34 | A | 35 | U | 36 | * | A | 95 | G | 96 | A | 97 | G | 98 | A | 99 | C | 100 | cWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUGAUGG*CUAAGC | 1 |
| GGGAGC*GGGAGC | 1 |
| AGGAAU*AGAAUU | 1 |
| AGGAAC*GGAAUU | 1 |
| GUCAAU*AGAGAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGAA*GAAU | 2 |
| UGAUG*UAAG | 1 |
| GGAG*GGAG | 1 |
| UCAA*GAGA | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.2 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-09-26 | 2018-10-19 |
| Status | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | New id, no parents | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Other IL (1)
- Double sheared; A in syn; two near cWW pairs (1)
- Basepair signature
- cWW-L-R-cWW-L-R-cWW-cWW
- Heat map statistics
- Min 0.06 | Avg 0.51 | Max 0.91
Coloring options: