Motif IL_94518.4 Version IL_94518.4 of this group appears in releases 3.25 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-9 | 4-10 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4WF9_058 | 4WF9 | 0.7415 | 1 | X | LSU rRNA | C | 1511 | U | 1512 | A | 1513 | A | 1514 | G | 1515 | C | 1516 | * | G | 1564 | U | 1565 | G | 1566 | A | 1567 | U | 1568 | G | 1570 | cWW | ntHS | ncWS | ncWWa | cWW | |||
| 2 | IL_6CZR_142 | 6CZR | 0.1198 | 0 | 1a | SSU rRNA | G | 657 | G | 658 | A | 659 | A | 660 | U | 661 | U | 662 | * | A | 696 | G | 697 | G | 698 | A | 699 | A | 700 | C | 701 | cWW | cWW | ncWw | ncWWa | ncWW | |||
| 3 | IL_5J7L_034 | 5J7L | 0.0647 | 0 | AA | SSU rRNA | A | 673 | G | 674 | A | 675 | A | 676 | U | 677 | U | 678 | * | A | 712 | G | 713 | G | 714 | A | 715 | A | 716 | U | 717 | cWW | cWW | ncWw | cWW | ncWWa | cWW | ||
| 4 | IL_4LFB_030 | 4LFB | 0.0000 | 0 | A | SSU rRNA | G | 673 | G | 674 | A | 675 | A | 676 | U | 677 | U | 678 | * | A | 712 | G | 713 | G | 714 | A | 715 | A | 716 | C | 717 | cWW | cWW | ncWw | cWW | ncWWa | cWW | ||
| 5 | IL_4N0T_001 | 4N0T | 0.6769 | 0 | Double sheared; A in syn; two near cWW pairs | B | U6 snRNA | A | 95 | G | 96 | A | 97 | G | 98 | A | 99 | C | 100 | * | G | 31 | U | 32 | C | 33 | A | 34 | A | 35 | U | 36 | cWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAAUU*AGGAAC | 2 |
| CUAAGC*GUGAUGG | 1 |
| AGAAUU*AGGAAU | 1 |
| AGAGAC*GUCAAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAU*GGAA | 3 |
| UAAG*UGAUG | 1 |
| GAGA*UCAA | 1 |
Release history
| Release | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 | 2021-08-18 | 2021-09-15 | 2021-10-13 | 2021-11-10 | 2021-12-08 | 2022-01-05 | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Double sheared; A in syn; two near cWW pairs (1)
- Basepair signature
- cWW-bif-cWW-cWW-cWW-cWW
- Heat map statistics
- Min 0.06 | Avg 0.44 | Max 0.91
Coloring options: