Motif IL_94744.1 Version IL_94744.1 of this group appears in releases 0.1 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 1-17 | 2-16 | 4-14 | 5-13 | 6-7 | 7-12 | 8-11 | 9-10 | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3D0U_003 | 3D0U | 0.0000 | 0 | 9x8 Sarcin-Ricin with GA cWW pair; G-bulge | A | Lysine Riboswitch RNA | G | 19 | A | 20 | U | 21 | G | 22 | A | 23 | G | 24 | U | 25 | A | 26 | G | 27 | * | U | 60 | G | 61 | A | 62 | A | 63 | A | 64 | G | 65 | G | 66 | C | 67 | cWW | cWW | tSH | tHH | cSH | tWH | tHS | cWW |
| 2 | IL_3DIR_003 | 3DIR | 0.0822 | 0 | A | RNA (174-MER) | G | 22 | A | 23 | U | 24 | G | 25 | A | 26 | G | 27 | U | 28 | A | 29 | G | 30 | * | U | 63 | G | 64 | A | 65 | A | 66 | A | 67 | G | 68 | G | 69 | C | 70 | cWW | cWW | tSH | tHH | cSH | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUGAGUAG*UGAAAGGC | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUGAGUA*GAAAGG | 2 |
Release history
| Release | 0.1 | 0.2 | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 | 1.15 | 1.17 | 1.18 | 2.0 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2011-12-08 | 2011-12-08 | 2011-12-08 | 2011-12-08 | 2011-12-08 | 2012-04-02 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-20 | 2014-09-04 | 2014-10-07 | 2017-04-24 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- 9x8 Sarcin-Ricin with GA cWW pair; G-bulge (1)
- Basepair signature
- cWW-cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW
- Heat map statistics
- Min 0.08 | Avg 0.04 | Max 0.08
Coloring options: