Motif IL_95652.2 Version IL_95652.2 of this group appears in releases 0.6 to 1.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 3-12 | 4-5 | 5-11 | 6-10 | 8-9 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5F_057 | 3U5F | 0.1059 | 0 | 6 | 18S rRNA | G | 1111 | G | 1112 | A | 1113 | G | 1114 | U | 1115 | A | 1116 | U | 1117 | G | 1118 | * | U | 1129 | G | 1130 | A | 1131 | A | 1132 | A | 1133 | C | 1134 | cWW | tSH | tHH | cSH | tWH | tHS | cWW | |
| 2 | IL_1FJG_034 | 1FJG | 0.0000 | 0 | A | SSU rRNA | G | 887 | G | 888 | A | 889 | G | 890 | U | 891 | A | 892 | C | 893 | G | 894 | * | U | 905 | G | 906 | A | 907 | A | 908 | A | 909 | C | 910 | cWW | tSH | tHH | cSH | tWH | tHS | cWW | |
| 3 | IL_2AW7_041 | 2AW7 | 0.1050 | 0 | A | 16S ribosomal RNA | G | 887 | G | 888 | A | 889 | G | 890 | U | 891 | A | 892 | C | 893 | G | 894 | * | U | 905 | A | 906 | A | 907 | A | 908 | A | 909 | C | 910 | cWW | tSH | tHH | cSH | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAGUAUG*UGAAAC | 1 |
| GGAGUACG*UGAAAC | 1 |
| GGAGUACG*UAAAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAGUAU*GAAA | 1 |
| GAGUAC*GAAA | 1 |
| GAGUAC*AAAA | 1 |
Release history
| Release | 0.6 | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2012-04-02 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_95652.2 | Only in the parent motif |
|---|---|---|---|
| IL_95652.1 Compare | IL_2AW7_041, IL_1FJG_034 | IL_3U5F_057 |
Children motifs
| Child motif | Common motif instances | Only in IL_95652.2 | Only in the child motif |
|---|---|---|---|
| IL_95652.3 Compare | IL_2AW7_041, IL_3U5F_057, IL_1FJG_034 | IL_4BPP_052 |
- Annotations
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-L-cWW
- Heat map statistics
- Min 0.11 | Avg 0.08 | Max 0.14
Coloring options: