Motif IL_95652.6 Version IL_95652.6 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-12 | 2-13 | 3-11 | 4-9 | 5-8 | 6-7 | 10-11 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2AW7_041 | 2AW7 | 0.1378 | 0 | A | SSU rRNA | U | 905 | A | 906 | A | 907 | A | 908 | A | 909 | C | 910 | * | G | 887 | G | 888 | A | 889 | G | 890 | U | 891 | A | 892 | C | 893 | G | 894 | cWW | tSH | tHW | tHH | tHS | cWW | cSH | ||
| 2 | IL_1FJG_034 | 1FJG | 0.1180 | 0 | 8x6 Sarcin-Ricin with inserted Y; G-bulge (H) | A | SSU rRNA | U | 905 | G | 906 | A | 907 | A | 908 | A | 909 | C | 910 | * | G | 887 | G | 888 | A | 889 | G | 890 | U | 891 | A | 892 | C | 893 | G | 894 | cWW | tSH | tHW | tHH | tHS | cWW | cSH | |
| 3 | IL_3U5F_057 | 3U5F | 0.0976 | 0 | 6 | SSU rRNA | U | 1129 | G | 1130 | A | 1131 | A | 1132 | A | 1133 | C | 1134 | * | G | 1111 | G | 1112 | A | 1113 | G | 1114 | U | 1115 | A | 1116 | U | 1117 | G | 1118 | cWW | tSH | tHW | tHH | tHS | cWW | cSH | ||
| 4 | IL_4BPP_052 | 4BPP | 0.0000 | 0 | A | SSU rRNA | U | 1102 | G | 1103 | A | 1104 | A | 1105 | A | 1106 | C | 1107 | * | G | 1083 | A | 1084 | A | 1085 | G | 1086 | U | 1087 | A | 1088 | U | 1089 | G | 1090 | cWW | tSH | tHW | tHH | tHS | cWW | cSH | ||
| 5 | IL_4CUX_055 | 4CUX | 0.1071 | 0 | 2 | SSU rRNA | U | 1129 | G | 1130 | A | 1131 | A | 1132 | A | 1133 | C | 1134 | * | G | 1111 | G | 1112 | A | 1113 | G | 1114 | U | 1115 | A | 1116 | U | 1117 | G | 1118 | cWW | tSH | ntHW | ntHH | tHS | cWW | |||
| 6 | IL_3J7A_050 | 3J7A | 0.1566 | 0 | 8x6 Sarcin-Ricin with inserted Y; G-bulge (H) | A | SSU rRNA | A | 1230 | G | 1231 | A | 1232 | A | 1233 | A | 1234 | G | 1235 | * | C | 1212 | G | 1213 | A | 1214 | G | 1215 | U | 1216 | A | 1217 | U | 1218 | U | 1219 | cWW | tSH | tHW | tHH | tHS | cWW | cSH | |
| 7 | IL_4W23_083 | 4W23 | 0.8916 | 0 | 2 | SSU rRNA | C | 1747 | G | 1748 | G | 1749 | C | 1750 | C | 1751 | C | 1752 | * | G | 1780 | A | 1781 | G | 1782 | C | 1783 | G | 1784 | C | 1785 | U | 1786 | G | 1787 | cWW | ncWW | ncBW | ncWWa | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAAAC*GGAGUAUG | 2 |
| UAAAAC*GGAGUACG | 1 |
| UGAAAC*GGAGUACG | 1 |
| UGAAAC*GAAGUAUG | 1 |
| AGAAAG*CGAGUAUU | 1 |
| CGGCCC*GAGCGCUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAA*GAGUAU | 3 |
| AAAA*GAGUAC | 1 |
| GAAA*GAGUAC | 1 |
| GAAA*AAGUAU | 1 |
| GGCC*AGCGCU | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_95652.6 | Only in the parent motif |
|---|---|---|---|
| IL_95652.5 Compare | IL_2AW7_041, IL_1FJG_034, IL_3J7A_050, IL_4CUX_055, IL_3U5F_057, IL_4BPP_052 | IL_4W23_083 |
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- 8x6 Sarcin-Ricin with inserted Y; G-bulge (H) (2)
- Basepair signature
- cWW-R-tSH-tHW-cSH-tHH-tHS-cWW
- Heat map statistics
- Min 0.10 | Avg 0.31 | Max 0.93
Coloring options: