Motif IL_95884.1 Version IL_95884.1 of this group appears in releases 1.10 to 1.11
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 3-6 | 4-5 | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_3BNL_003 | 3BNL | 0.0000 | 0 | A+B | A site of bacterial ribosome | G | 15 | A | 16 | A | 17 | G | 18 | * | C | 6 | A | 7 | C | 8 | cWW | cWw | cWW |
2 | IL_2GDI_001 | 2GDI | 0.9670 | 0 | X | TPP riboswitch | A | 45 | U | 46 | A | 47 | C | 48 | * | G | 18 | G | 19 | U | 20 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GAAG*CAC | 1 |
AUAC*GGU | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AA*A | 1 |
UA*G | 1 |
Release history
Parent motifs
Parent motif | Common motif instances | Only in IL_95884.1 | Only in the parent motif |
---|---|---|---|
IL_19898.1 Compare | IL_3BNL_003 | IL_2GDI_001 | IL_1LNG_001 |
IL_75447.1 Compare | IL_2GDI_001 | IL_3BNL_003 | IL_2GDI_005, IL_3BNL_002 |
Children motifs
Child motif | Common motif instances | Only in IL_95884.1 | Only in the child motif |
---|---|---|---|
IL_12024.1 Compare | IL_3BNL_003 | IL_2GDI_001 | IL_1LNG_001 |
IL_31039.1 Compare | IL_2GDI_001 | IL_3BNL_003 | IL_2GDI_005 |
- Annotations
-
- (2)
- Basepair signature
- cWW-L-cWW-cWW
- Heat map statistics
- Min 0.97 | Avg 0.48 | Max 0.97
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