Motif IL_19898.1 Version IL_19898.1 of this group appears in releases 1.1 to 1.9
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-4 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1LNG_001 | 1LNG | 0.0000 | 0 | B | SRP S RNA | G | 152 | A | 153 | G | 154 | * | U | 175 | A | 176 | A | 177 | C | 178 | cWW | cWW | |
| 2 | IL_3BNL_003 | 3BNL | 0.8564 | 0 | B+A | A site of bacterial ribosome | C | 6 | A | 7 | C | 8 | * | G | 15 | A | 16 | A | 17 | G | 18 | cWW | cwW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAG*UAAC | 1 |
| CAC*GAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*AA | 2 |
Release history
| Release | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_19898.1 | Only in the parent motif |
|---|---|---|---|
| IL_01239.1 Compare | IL_1LNG_001 | IL_3BNL_003 | IL_2ZJR_101, IL_2PXV_001, IL_1FJG_057, IL_2AW7_068 |
| IL_91132.1 Compare | IL_3BNL_003 | IL_1LNG_001 | IL_1S72_016 |
Children motifs
| Child motif | Common motif instances | Only in IL_19898.1 | Only in the child motif |
|---|---|---|---|
| IL_95884.1 Compare | IL_3BNL_003 | IL_1LNG_001 | IL_2GDI_001 |
| IL_34076.1 Compare | IL_1LNG_001 | IL_3BNL_003 |
- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-R-cWW
- Heat map statistics
- Min 0.86 | Avg 0.43 | Max 0.86
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