Motif IL_97601.4 Version IL_97601.4 of this group appears in releases 3.15 to 3.19
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 1-8 | 2-7 | 3-4 | 5-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5Y7M_005 | 5Y7M | 0.1031 | 1 | Receptor of 11-nt loop-receptor motif | D | RNA (52-MER) | C | 46 | U | 47 | A | 48 | A | 49 | G | 50 | * | U | 3 | A | 4 | G | 6 | cWW | tWH | cSH | cWW |
| 2 | IL_6AZ4_002 | 6AZ4 | 0.1004 | 1 | Receptor of 11-nt loop-receptor motif | A | RNA (32-MER) | C | 13 | U | 14 | A | 15 | A | 16 | G | 17 | * | U | 28 | A | 29 | G | 31 | cWW | tWH | cSH | cWW |
| 3 | IL_5M0H_003 | 5M0H | 0.0718 | 1 | Receptor of 11-nt loop-receptor motif | A | ASH1 E3 (42 nt-TL/TLR) | C | 14 | U | 15 | A | 16 | A | 17 | G | 18 | * | U | 29 | A | 30 | G | 32 | cWW | tWH | cSH | cWW |
| 4 | IL_4K27_004 | 4K27 | 0.0000 | 1 | Receptor of 11-nt loop-receptor motif | U | Myotonic Dystrophy Type 2 RNA | C | 19 | U | 20 | A | 21 | A | 22 | G | 23 | * | U | 34 | A | 35 | G | 37 | cWW | tWH | cSH | cWW |
| 5 | IL_5BTM_002 | 5BTM | 0.0508 | 1 | Receptor of 11-nt loop-receptor motif | A | RNA (55-mer) | C | 19 | U | 20 | A | 21 | A | 22 | G | 23 | * | U | 34 | A | 35 | G | 37 | cWW | tWH | cSH | cWW |
| 6 | IL_5XTM_001 | 5XTM | 0.0642 | 1 | Receptor of 11-nt loop-receptor motif | B | RNA (47-MER) | C | 41 | U | 42 | A | 43 | A | 44 | G | 45 | * | U | 3 | A | 4 | G | 6 | cWW | tWH | cSH | cWW |
| 7 | IL_2R8S_007 | 2R8S | 0.1039 | 1 | Receptor of 11-nt loop-receptor motif | R | P4-P6 RNA RIBOZYME DOMAIN | C | 223 | U | 224 | A | 225 | A | 226 | G | 227 | * | U | 247 | A | 248 | G | 250 | cWW | tWH | cSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAAG*UAUG | 7 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAA*AU | 7 |
- Annotations
-
- Receptor of 11-nt loop-receptor motif (7)
- Basepair signature
- cWW-tWH-cSH-cWW
- Heat map statistics
- Min 0.05 | Avg 0.09 | Max 0.17
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