Motif IL_97601.5 Version IL_97601.5 of this group appears in releases 3.20 to 3.31
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-5 | 2-7 | 3-4 | 6-7 | 6-8 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5T83_002 | 5T83 | 0.8802 | 0 | 8-nt loop receptor | A | Guanidine-I riboswitch | G | 39 | U | 40 | C | 41 | * | G | 16 | G | 17 | U | 18 | U | 19 | C | 20 | cWW | ncBW | cWW | cSH | ncSH | |
| 2 | IL_5U3G_002 | 5U3G | 0.8623 | 0 | 8-nt loop receptor | B | Guanidine-I riboswitch | G | 27 | U | 28 | C | 29 | * | G | 10 | G | 11 | U | 12 | U | 13 | C | 14 | cWW | cBW | ncwW | cWW | cSH | |
| 3 | IL_5Y7M_005 | 5Y7M | 0.1031 | 1 | Receptor of 11-nt loop-receptor motif | D | RNA (52-MER) | U | 3 | A | 4 | G | 6 | * | C | 46 | U | 47 | A | 48 | A | 49 | G | 50 | cWW | tHW | cWW | cSH | ||
| 4 | IL_6AZ4_002 | 6AZ4 | 0.1004 | 1 | Receptor of 11-nt loop-receptor motif | A | RNA (32-MER) | U | 28 | A | 29 | G | 31 | * | C | 13 | U | 14 | A | 15 | A | 16 | G | 17 | cWW | tHW | cWW | cSH | ||
| 5 | IL_5M0H_003 | 5M0H | 0.0718 | 1 | Receptor of 11-nt loop-receptor motif | A | ASH1 E3 (42 nt-TL/TLR) | U | 29 | A | 30 | G | 32 | * | C | 14 | U | 15 | A | 16 | A | 17 | G | 18 | cWW | tHW | cWW | cSH | ||
| 6 | IL_5XTM_001 | 5XTM | 0.0642 | 1 | Receptor of 11-nt loop-receptor motif | B | RNA (47-MER) | U | 3 | A | 4 | G | 6 | * | C | 41 | U | 42 | A | 43 | A | 44 | G | 45 | cWW | tHW | cWW | cSH | ||
| 7 | IL_4K27_004 | 4K27 | 0.0000 | 1 | Receptor of 11-nt loop-receptor motif | U | Myotonic Dystrophy Type 2 RNA | U | 34 | A | 35 | G | 37 | * | C | 19 | U | 20 | A | 21 | A | 22 | G | 23 | cWW | tHW | cWW | cSH | ||
| 8 | IL_5BTM_002 | 5BTM | 0.0508 | 1 | Receptor of 11-nt loop-receptor motif | A | RNA (55-mer) | U | 34 | A | 35 | G | 37 | * | C | 19 | U | 20 | A | 21 | A | 22 | G | 23 | cWW | tHW | cWW | cSH | ||
| 9 | IL_6DVK_001 | 6DVK | 0.0889 | 1 | Receptor of 11-nt loop-receptor motif | H | RNA (95-MER) | U | 6 | A | 7 | G | 9 | * | C | 85 | U | 86 | A | 87 | A | 88 | G | 89 | cWW | tHW | cWW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAUG*CUAAG | 7 |
| GUC*GGUUC | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AU*UAA | 7 |
| U*GUU | 2 |
Release history
| Release | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Receptor of 11-nt loop-receptor motif (7)
- 8-nt loop receptor (2)
- Basepair signature
- cWW-cSH-tHW-cWW
- Heat map statistics
- Min 0.05 | Avg 0.35 | Max 0.90
Coloring options: