Motif IL_98421.5 Version IL_98421.5 of this group appears in releases 1.14 to 1.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 6 | 7 | 1-4 | 1-7 | 2-3 | 2-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5H_123 | 3U5H | 0.7839 | 2 | 5 | 25S rRNA | A | 3091 | A | 3094 | * | U | 3047 | A | 3048 | A | 3049 | U | 3050 | U | 3051 | tHH | cWW | cWW | ||
| 2 | IL_1FJG_013 | 1FJG | 0.0000 | 0 | C-loop (H) | A | SSU rRNA | G | 292 | G | 293 | * | U | 304 | G | 305 | G | 306 | C | 307 | C | 308 | cWW | cWW | ntSH | |
| 3 | IL_2AW7_016 | 2AW7 | 0.3565 | 0 | A | 16S ribosomal RNA | G | 292 | G | 293 | * | U | 304 | G | 305 | A | 306 | C | 307 | C | 308 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACCA*UAAUU | 1 |
| GG*UGGCC | 1 |
| GG*UGACC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CC*AAU | 1 |
| *GGC | 1 |
| *GAC | 1 |
Release history
| Release | 1.14 |
|---|---|
| Date | 2014-04-27 |
| Status | Updated, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_98421.5 | Only in the parent motif |
|---|---|---|---|
| IL_98421.4 Compare | IL_1FJG_013, IL_2AW7_016 | IL_3U5H_123 | IL_4BPP_023 |
| IL_39355.1 Compare | IL_3U5H_123 | IL_1FJG_013, IL_2AW7_016 | IL_4A1B_119 |
Children motifs
| Child motif | Common motif instances | Only in IL_98421.5 | Only in the child motif |
|---|---|---|---|
| IL_98421.6 Compare | IL_1FJG_013, IL_2AW7_016, IL_3U5H_123 | IL_4CUV_128 |
- Annotations
-
- (2)
- C-loop (H) (1)
- Basepair signature
- cWW-R-R-R-cWW
- Heat map statistics
- Min 0.36 | Avg 0.43 | Max 0.80
Coloring options: