#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4break 5 6 71-73-64-5
1 IL_1FJG_0031FJG0.30882A SSU rRNAC47U49A50G52*U359A360G361cWWcWW
2 IL_2AW7_0032AW70.00002A16S ribosomal RNAC47U49A50C52*G359G360G361cWWtSscWW
3 IL_4BPP_0044BPP0.33143A18S RRNAU41U44A45C47*G423A424A425cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CCUAAG*UAG1
CCUAAC*GGG1
UAUUAAC*GAA1
Non-Watson-Crick part of the motif
SequenceCounts
CUAA*A1
CUAA*G1
AUUAA*A1

Release history

Release1.121.131.141.15
Date2014-03-012014-03-292014-04-272014-06-20
StatusUpdated, 2 parentsExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_06211.3Only in the parent motif
IL_06211.2
Compare
IL_2AW7_003, IL_1FJG_003IL_4BPP_004IL_3U5F_004
IL_22358.1
Compare
IL_4BPP_004IL_2AW7_003, IL_1FJG_003IL_1MFQ_006

Children motifs

Child motifCommon motif instancesOnly in IL_06211.3Only in the child motif
IL_99363.1
Compare
IL_2AW7_003, IL_4BPP_004, IL_1FJG_003IL_1VX2_004, IL_3J7A_003
Annotations
  • (3)
  • Basepair signature
    cWW-L-R-L-cWW
    Heat map statistics
    Min 0.31 | Avg 0.24 | Max 0.46
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