#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 7 8break 9 10 11 12break 13 14 15 16 17 18 191-192-183-174-124-155-115-145-157-108-912-1316-17
1 J3_4LFB_0024LFB0.57850A SSU rRNAU1372G1373A1374A1375U1376A1377C1378G1379*C936A937A938G939*C1344U1345A1346G1347U1348A1349A1350cWWtSHtHWcsStHHcSstWWatHScWWcWWcSH
2 J3_4V88_0354V880.00000A6 SSU rRNAU1609G1610A1611U1612U1613A1614C1615G1616*C1161C1162A1163G1164*C1581U1582A1583G1584U1585A1586A1587cWWtSHtHWcSstWWantHHcWWcWWcSH

3D structures

Complete motif including flanking bases
SequenceCounts
CAAG*CUAGUAA*UGAAUACG1
CCAG*CUAGUAA*UGAUUACG1
Non-Watson-Crick part of the motif
SequenceCounts
AA*UAGUA*GAAUAC1
CA*UAGUA*GAUUAC1

Release history

Release3.23.33.43.53.63.73.83.93.103.113.123.133.143.153.163.173.183.193.203.213.223.233.243.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.473.483.493.503.513.523.533.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.763.773.783.79
Date2018-02-092018-03-082018-04-062018-05-042018-06-012018-06-292018-07-272018-08-242018-09-212018-10-192018-11-162018-12-142019-01-112019-02-082019-03-082019-04-052019-05-032019-05-312019-06-282019-07-262019-08-232019-09-192019-10-162019-11-132019-12-112020-01-082020-02-052020-03-042020-04-012020-04-292020-05-272020-06-242020-07-222020-08-192020-09-162020-10-142020-11-112020-12-092021-01-062021-02-032021-03-032021-03-312021-04-282021-05-262021-06-232021-07-212021-08-182021-09-152021-10-132021-11-102021-12-082022-01-052022-02-022022-03-022022-03-302022-04-272022-05-252022-06-222022-07-202022-08-172022-10-122022-11-092022-12-072023-01-042023-02-012023-03-012023-03-292023-04-262023-05-242023-06-212023-07-192023-08-162023-09-132023-10-112023-11-082023-12-062024-01-032024-01-03
StatusNew id, no parentsExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (2)
  • Basepair signature
    cWW-tSH-tHW-cSH-tHH-cSS-tWW-F-F-cWW-cWW-F
    Heat map statistics
    Min 0.58 | Avg 0.29 | Max 0.58
    Help

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