Motif J3_28621.2 Version J3_28621.2 of this group appears in releases 3.27 to 3.79

Download

Csv

Json

Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7	break		8		9		10	break		11		12		13	1-13	2-6	3-5	5-10	5-11	7-8	9-12	10-11
1	J3_5TBW_007	5TBW	0.2219	0		1	LSU rRNA	G	1256	C	1257	U	1258	A	1259	A	1260	G	1261	G	1262	*	C	1277	A	1278	C	1279	*	G	1230	A	1231	C	1232	cWW	tWW	tSH		ntSS	cWW		cWW
2	J3_5J7L_040	5J7L	0.1732	0		DA	LSU rRNA	U	1081	U	1082	U	1083	A	1084	A	1085	A	1086	G	1087	*	C	1102	A	1103	C	1104	*	G	1055	G	1056	A	1057	cWW	ntWW		cSS	tSS	cWW	tHS	cWW
3	J3_5D8H_001	5D8H	0.1280	0		A	LSU rRNA	U	1191	U	1192	U	1193	A	1194	A	1195	A	1196	G	1197	*	C	1212	A	1213	C	1214	*	G	1165	G	1166	A	1167	cWW	ntWW	tSH	cSS	tSS	cWW	tHS	cWW
4	J3_1MMS_001	1MMS	0.1265	0		C	23S RIBOSOMAL RNA	U	1081	U	1082	U	1083	A	1084	A	1085	A	1086	G	1087	*	C	1102	A	1103	C	1104	*	G	1055	G	1056	A	1057	cWW	tWW	ntSH	cSS	tSS	cWW	tHS	cWW
5	J3_6PRV_001	6PRV	0.1344	0		A	LSU rRNA	U	1081	U	1082	U	1083	A	1084	A	1085	A	1086	G	1087	*	C	1102	A	1103	C	1104	*	G	1055	G	1056	A	1057	cWW	ntWW	tSH	cSS	tSS	cWW	tHS	cWW
6	J3_4V9F_004	4V9F	0.0000	0		0	LSU rRNA	U	1185	C	1186	U	1187	A	1188	A	1189	G	1190	A	1191	*	U	1206	A	1207	C	1208	*	G	1159	G	1160	A	1161	cWW	ntWW	tSH	cSS	tSS	cWW		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GGAUUUAAAGCAC	4
GACGCUAAGGCAC	1
GGAUCUAAGAUAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
GUUAAAA	4
ACUAAGA	1
GCUAAGA	1

Release history

Release	3.27	3.28	3.29	3.30	3.31	3.32	3.33	3.34	3.35	3.36	3.37	3.38	3.39	3.40	3.41	3.42	3.43	3.44	3.45	3.46	3.47	3.48	3.49	3.50	3.51	3.52	3.53	3.54	3.55	3.56	3.57	3.58	3.59	3.60	3.61	3.62	3.63	3.64	3.65	3.66	3.67	3.68	3.69	3.70	3.71	3.72	3.73	3.74	3.75	3.76	3.77	3.78	3.79
Date	2020-01-08	2020-02-05	2020-03-04	2020-04-01	2020-04-29	2020-05-27	2020-06-24	2020-07-22	2020-08-19	2020-09-16	2020-10-14	2020-11-11	2020-12-09	2021-01-06	2021-02-03	2021-03-03	2021-03-31	2021-04-28	2021-05-26	2021-06-23	2021-07-21	2021-08-18	2021-09-15	2021-10-13	2021-11-10	2021-12-08	2022-01-05	2022-02-02	2022-03-02	2022-03-30	2022-04-27	2022-05-25	2022-06-22	2022-07-20	2022-08-17	2022-10-12	2022-11-09	2022-12-07	2023-01-04	2023-02-01	2023-03-01	2023-03-29	2023-04-26	2023-05-24	2023-06-21	2023-07-19	2023-08-16	2023-09-13	2023-10-11	2023-11-08	2023-12-06	2024-01-03	2024-01-03
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations
Basepair signature: cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW
Heat map statistics: Min 0.09 | Avg 0.13 | Max 0.24

Help

Coloring options: Nucleotide numbers

Copyright 2024 BGSU RNA group. Page generated in 0.095 s