Motif J3_28621.4 Version J3_28621.4 of this group appears in releases 3.91 to 3.94

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7	break		8		9		10	break		11		12		13	1-13	2-6	5-10	5-11	7-8	9-12	10-11
1	J3_8P9A_052	8P9A	0.1543	0	AR	LSU rRNA	G	1256	C	1257	U	1258	A	1259	A	1260	G	1261	G	1262	*	C	1277	A	1278	C	1279	*	G	1230	A	1231	C	1232	cWW	ntWW	cSs	ntSs	cWW	tHS	cWW
2	J3_4V9F_004	4V9F	0.1280	0	0	LSU rRNA	U	1185	C	1186	U	1187	A	1188	A	1189	G	1190	A	1191	*	U	1206	A	1207	C	1208	*	G	1159	G	1160	A	1161	cWW	tWW		tSs	cWW		cWW
3	J3_6PRV_001	6PRV	0.1098	0	A	LSU rRNA	U	1081	U	1082	U	1083	A	1084	A	1085	A	1086	G	1087	*	C	1102	A	1103	C	1104	*	G	1055	G	1056	A	1057	cWW	tWW	cSs	tSs	cWW	tHS	cWW
4	J3_1MMS_001	1MMS	0.0898	0	C	23S RIBOSOMAL RNA	U	1081	U	1082	U	1083	A	1084	A	1085	A	1086	G	1087	*	C	1102	A	1103	C	1104	*	G	1055	G	1056	A	1057	cWW	tWW	ncSs	tSs	cWW	tHS	cWW
5	J3_5D8H_001	5D8H	0.0000	0	A	LSU rRNA	U	1191	U	1192	U	1193	A	1194	A	1195	A	1196	G	1197	*	C	1212	A	1213	C	1214	*	G	1165	G	1166	A	1167	cWW	tWW	ncSs	tSs	cWW	tHS	cWW
6	J3_5J7L_040	5J7L	0.1257	0	DA	LSU rRNA	U	1081	U	1082	U	1083	A	1084	A	1085	A	1086	G	1087	*	C	1102	A	1103	C	1104	*	G	1055	G	1056	A	1057	cWW	tWW	cSs	tSs	cWW	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GGAUUUAAAGCAC	4
GACGCUAAGGCAC	1
GGAUCUAAGAUAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
GUUAAAA	4
ACUAAGA	1
GCUAAGA	1

Release history

Release	3.91	3.92	3.93	3.94
Date	2024-12-04	2025-01-01	2025-01-29	2025-02-26
Status	Updated, 1 parent	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (6)
Basepair signature: cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW
Heat map statistics: Min 0.09 | Avg 0.12 | Max 0.17

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Coloring options: Nucleotide numbers

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