#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 7break 8 9 10break 11 12 131-132-65-105-117-89-1210-11
1 J3_8P9A_0528P9A0.15430AR LSU rRNAG1256C1257U1258A1259A1260G1261G1262*C1277A1278C1279*G1230A1231C1232cWWntWWcSsntSscWWtHScWW
2 J3_4V9F_0044V9F0.128000 LSU rRNAU1185C1186U1187A1188A1189G1190A1191*U1206A1207C1208*G1159G1160A1161cWWtWWtSscWWcWW
3 J3_6PRV_0016PRV0.10980A LSU rRNAU1081U1082U1083A1084A1085A1086G1087*C1102A1103C1104*G1055G1056A1057cWWtWWcSstSscWWtHScWW
4 J3_1MMS_0011MMS0.08980C23S RIBOSOMAL RNAU1081U1082U1083A1084A1085A1086G1087*C1102A1103C1104*G1055G1056A1057cWWtWWncSstSscWWtHScWW
5 J3_5D8H_0015D8H0.00000A LSU rRNAU1191U1192U1193A1194A1195A1196G1197*C1212A1213C1214*G1165G1166A1167cWWtWWncSstSscWWtHScWW
6 J3_5J7L_0405J7L0.12570DA LSU rRNAU1081U1082U1083A1084A1085A1086G1087*C1102A1103C1104*G1055G1056A1057cWWtWWcSstSscWWtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
GGA*UUUAAAG*CAC4
GAC*GCUAAGG*CAC1
GGA*UCUAAGA*UAC1
Non-Watson-Crick part of the motif
SequenceCounts
G*UUAAA*A4
A*CUAAG*A1
G*CUAAG*A1

Release history

Release3.913.923.933.94
Date2024-12-042025-01-012025-01-292025-02-26
StatusUpdated, 1 parentExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (6)
  • Basepair signature
    cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW
    Heat map statistics
    Min 0.09 | Avg 0.12 | Max 0.17
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