#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5break 6 7 8break 9 10 11 121-122-114-74-104-115-68-9
1 J3_5J7L_0415J7L0.21681DA LSU rRNAC1298G1299G1300A1301G1303*C1625A1626G1627*C1639A1640A1641G1642cWWtSHntHWcWWcWW
2 J3_4WF9_0044WF90.17951X LSU rRNAC1335G1336A1337U1338G1340*C1669A1670A1671*U1683A1684A1685G1686cWWtSHntHHtWWcWWcWW
3 J3_7A0S_0067A0S0.00001X LSU rRNAC1311G1312U1313A1314G1316*C1641G1642A1643*U1656A1657A1658G1659cWWtSHtSsntHWcWWcWW
4 J3_8VTW_0048VTW0.091011A LSU rRNAC1298G1299U1300A1301G1303*C1625G1626G1627*U1639C1640A1641G1642cWWtSHtSsntHWcWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGGAAG*CAG*CAAG1
CGAUUG*CAA*UAAG1
CGUAAG*CGA*UAAG1
CGUAAG*CGG*UCAG1
Non-Watson-Crick part of the motif
SequenceCounts
GGAA*A*AA1
GAUU*A*AA1
GUAA*G*AA1
GUAA*G*CA1

Release history

Release3.873.88
Date2024-08-142024-09-11
StatusUpdated, 1 parentExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (4)
  • Basepair signature
    cWW-tSH-tHW-F-F-cWW-cWW-F
    Heat map statistics
    Min 0.09 | Avg 0.15 | Max 0.27
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