Motif J3_34049.1 Version J3_34049.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | break | 9 | 10 | 1-10 | 2-9 | 4-5 | 7-10 | 8-9 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | J3_6CZR_079 | 6CZR | 0.5480 | 0 | 1a | SSU rRNA | U | 1066 | G | 1067 | U | 1068 | U | 1069 | * | G | 1082 | C | 1083 | A | 1084 | A | 1085 | * | U | 1056 | G | 1057 | cWW | ntSH | ncWWa | ntSs | cWW |
2 | J3_4LFB_017 | 4LFB | 0.5026 | 0 | A | SSU rRNA | U | 1083 | G | 1084 | U | 1085 | U | 1086 | * | G | 1099 | C | 1100 | A | 1101 | A | 1102 | * | U | 1073 | G | 1074 | cWW | cWWa | tSs | cWW | |
3 | J3_4V88_082 | 4V88 | 0.0000 | 1 | A6 | SSU rRNA | U | 1303 | G | 1304 | U | 1305 | C | 1306 | * | G | 1318 | A | 1319 | A | 1321 | A | 1322 | * | U | 1293 | G | 1294 | cWW | cWW | tSs | cWW | |
4 | J3_8C3A_085 | 8C3A | 0.2884 | 1 | CM | SSU rRNA | U | 1288 | G | 1289 | U | 1290 | C | 1291 | * | G | 1303 | A | 1304 | A | 1306 | A | 1307 | * | U | 1278 | G | 1279 | cWW | ntSH | cWW | ntSs | cWW |
5 | J3_5J7L_009 | 5J7L | 0.4048 | 2 | AA | SSU rRNA | U | 1083 | G | 1084 | U | 1085 | G | 1087 | * | C | 1098 | G | 1099 | A | 1101 | A | 1102 | * | U | 1073 | G | 1074 | cWW | cWW | tSs | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UG*UGUU*GCAA | 2 |
UG*UGUC*GAUAA | 2 |
UG*UGUUG*CGCAA | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
*GU*CA | 2 |
*GU*AUA | 2 |
*GUU*GCA | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-tSS-F-cWW-F-cWW-F
- Heat map statistics
- Min 0.15 | Avg 0.40 | Max 0.69
Coloring options: