Motif J3_34864.1 Version J3_34864.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | break | 14 | 15 | 1-15 | 4-11 | 5-10 | 6-9 | 7-8 | 13-14 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_7A0S_019 | 7A0S | 0.0927 | 0 | X | LSU rRNA | G | 1584 | A | 1585 | A | 1586 | A | 1587 | A | 1588 | G | 1589 | C | 1590 | * | G | 1438 | G | 1439 | G | 1440 | A | 1441 | C | 1442 | G | 1443 | * | C | 1580 | C | 1581 | cWW | ntHH | tHS | ntHS | cWW | cWW |
| 2 | J3_8VTW_044 | 8VTW | 0.0000 | 0 | 1A | LSU rRNA | G | 1568 | A | 1569 | A | 1570 | A | 1571 | A | 1572 | G | 1573 | C | 1574 | * | G | 1424 | G | 1425 | G | 1426 | A | 1427 | C | 1428 | G | 1429 | * | C | 1564 | C | 1565 | cWW | tHH | tHS | tHS | cWW | cWW |
| 3 | J3_5J7L_069 | 5J7L | 0.0784 | 0 | DA | LSU rRNA | G | 1568 | A | 1569 | A | 1570 | A | 1571 | A | 1572 | G | 1573 | C | 1574 | * | G | 1424 | G | 1425 | G | 1426 | A | 1427 | C | 1428 | G | 1429 | * | C | 1564 | C | 1565 | cWW | tHH | tHS | tHS | cWW | cWW |
| 4 | J3_4WF9_017 | 4WF9 | 0.0916 | 0 | X | LSU rRNA | G | 1615 | A | 1616 | A | 1617 | A | 1618 | A | 1619 | G | 1620 | C | 1621 | * | G | 1468 | G | 1469 | G | 1470 | A | 1471 | C | 1472 | G | 1473 | * | C | 1611 | C | 1612 | cWW | tHH | tHS | tHS | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGGACG*CC*GAAAAGC | 4 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGAC**AAAAG | 4 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-F-cWW-F-tHH-F-tHS-tHS-cWW
- Heat map statistics
- Min 0.08 | Avg 0.07 | Max 0.11
Coloring options: