Motif J3_39238.2 Version J3_39238.2 of this group appears in releases 3.48 to 3.53

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6	break		7		8		9	break		10		11	1-11	2-9	3-5	6-7	9-10
1	J3_4Y4O_019	4Y4O	0.1739	3	2A	LSU rRNA	C	683	G	684	A	685	C	687	U	688	A	689	*	U	773	A	774	G	775	*	C	791	G	794	cWW	tWH	tSW	cWW	cWW
2	J3_7A0S_004	7A0S	0.1317	3	X	LSU rRNA	U	696	G	697	A	698	C	700	U	701	A	702	*	U	786	A	787	G	788	*	C	804	A	807	cWW	tWH	tSW	cWW	cWW
3	J3_4V9F_002	4V9F	0.0000	3	0	LSU rRNA	C	774	G	775	A	776	C	778	U	779	A	780	*	U	866	A	867	G	868	*	C	884	G	887	cWW	tWH	tSW	cWW	cWW
4	J3_5TBW_004	5TBW	0.0969	3	1	LSU rRNA	U	814	G	815	A	816	C	818	U	819	A	820	*	U	905	A	906	G	907	*	C	923	A	926	cWW	tWH	tSW	cWW	cWW
5	J3_5J7L_038	5J7L	0.0893	3	DA	LSU rRNA	U	683	G	684	A	685	C	687	U	688	A	689	*	U	773	G	774	G	775	*	C	791	A	794	cWW	tWH	tSW	cWW	cWW
6	J3_4WF9_002	4WF9	0.1107	3	X	LSU rRNA	U	728	G	729	A	730	C	732	U	733	A	734	*	U	818	A	819	G	820	*	C	836	A	839	cWW	tWH	tSW	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGAGCUAUAGCGAG	1
UGAGCUAUAGCGAA	1
CGAUCUAUAGCGAG	1
UGAACUAUAGCGAA	1
UGAUCUAUGGCAAA	1
UGAUCUAUAGCGAA	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAGCUAGA	2
GAUCUAGA	2
GAACUAGA	1
GAUCUGAA	1

Release history

Release	3.48	3.49	3.50	3.51	3.52	3.53
Date	2021-08-18	2021-09-15	2021-10-13	2021-11-10	2021-12-08	2022-01-05
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (6)
Basepair signature: cWW-tWH-cWW-tSW-F-F-cWW
Heat map statistics: Min 0.08 | Avg 0.12 | Max 0.32

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Coloring options: Nucleotide numbers

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