Motif J3_42157.2 Version J3_42157.2 of this group appears in releases 3.54 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 1-12 | 2-10 | 2-11 | 3-7 | 3-11 | 5-6 | 8-9 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_4V9F_005 | 4V9F | 0.0000 | 2 | 0 | LSU rRNA | C | 1404 | U | 1405 | A | 1407 | U | 1408 | G | 1409 | * | C | 1700 | A | 1701 | G | 1703 | * | C | 1715 | A | 1716 | A | 1717 | G | 1718 | cWW | tWH | tWW | cWW | cWW | ||
| 2 | J3_5TBW_009 | 5TBW | 0.7045 | 2 | 1 | LSU rRNA | U | 1837 | G | 1838 | A | 1839 | A | 1842 | C | 1843 | * | G | 1852 | U | 1853 | C | 1854 | * | G | 1488 | A | 1489 | A | 1490 | A | 1491 | cWW | ntSH | tHW | ntWW | cWW | cWW | |
| 3 | J3_4V9F_006 | 4V9F | 0.7059 | 2 | 0 | LSU rRNA | C | 1680 | G | 1681 | A | 1682 | A | 1685 | C | 1686 | * | G | 1695 | U | 1696 | G | 1697 | * | U | 1412 | A | 1413 | A | 1414 | G | 1415 | cWW | tSH | tHW | tWW | cWW | cWW | |
| 4 | J3_5J7L_042 | 5J7L | 0.7747 | 2 | DA | LSU rRNA | C | 1605 | C | 1606 | A | 1608 | A | 1610 | C | 1611 | * | G | 1620 | U | 1621 | G | 1622 | * | C | 1306 | A | 1307 | A | 1308 | G | 1309 | cWW | ntSH | tHW | tWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAAUG*CAUG*CAAG | 1 |
| GAAA*UGAUAAC*GUC | 1 |
| UAAG*CGAGAAC*GUG | 1 |
| CAAG*CCCAAAC*GUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAAU*AU*AA | 1 |
| AA*GAUAA*U | 1 |
| AA*GAGAA*U | 1 |
| AA*CCAAA*U | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 | 2023-12-06 | 2024-01-03 | 2024-01-03 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Heat map statistics
- Min 0.11 | Avg 0.33 | Max 0.77
Coloring options: