Motif J4_10408.3 Version J4_10408.3 of this group appears in releases 3.19 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | break | 13 | 14 | 15 | 1-15 | 4-5 | 4-10 | 6-9 | 7-8 | 12-13 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_6OF1_014 | 6OF1 | 0.0000 | 5 | 1w | tRNA | G | 5 | A | 6 | A | 9 | G | 10 | * | C | 25 | A | 26 | C | 27 | * | G | 43 | G | 44 | G | 45 | 7MG | 46 | G | 49 | * | C | 65 | A | 66 | C | 68 | cWW | cWW | cHS | cWW | cWW | cWW |
| 2 | J4_6GSK_031 | 6GSK | 0.4021 | 5 | 3L | tRNA | A | 5 | U | 6 | A | 9 | G | 10 | * | C | 25 | G | 26 | C | 27 | * | G | 43 | A | 44 | G | 45 | G | 46 | G | 49 | * | C | 65 | U | 66 | U | 68 | cWW | cWW | cHS | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAU(4SU)AG*CAC*GGG(7MG)UCG*CAUC | 1 |
| AUAUAG*CGC*GAGGUCG*CUAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AU(4SU)A*A*GG(7MG)UC*AU | 1 |
| UAUA*G*AGGUC*UA | 1 |
Release history
| Release | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 | 2021-08-18 | 2021-09-15 | 2021-10-13 | 2021-11-10 | 2021-12-08 | 2022-01-05 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cHS-F-F-F-cWW-F
- Heat map statistics
- Min 0.40 | Avg 0.20 | Max 0.40
Coloring options: