Motif J4_22413.1 Version J4_22413.1 of this group appears in releases 3.3 to 3.24
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | break | 12 | 13 | 1-13 | 3-4 | 3-8 | 3-9 | 5-8 | 5-9 | 6-7 | 11-12 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_5WT1_002 | 5WT1 | 0.0000 | 3 | C | tRNA | G | 7 | A | 9 | G | 10 | * | C | 25 | A | 26 | C | 27 | * | G | 43 | G | 44 | U | 45 | G | 46 | G | 49 | * | C | 65 | C | 66 | cWW | cWW | cHW | cWW | cWW | cWW | |||
| 2 | J4_1U0B_001 | 1U0B | 0.5136 | 2 | tRNA junction | A | tRNA | U | 7 | A | 9 | A | 10 | * | U | 25 | A | 26 | G | 27 | * | U | 43 | C | 44 | U | 45 | A | 46 | U | 49 | * | A | 65 | A | 66 | cWW | cWW | cHW | ncWB | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUAG*CAC*GGUGUCG*CC | 1 |
| UUAA*UAG*UCUAGU*AA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UA*A*GUGUC* | 1 |
| UA*A*CUAG* | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tRNA junction (1)
- (1)
- Basepair signature
- cWW-F-F-F-cWW-F-cWW-F-cWW
- Heat map statistics
- Min 0.51 | Avg 0.26 | Max 0.51
Coloring options: