Motif J4_35578.1 Version J4_35578.1 of this group appears in releases 3.2 to 3.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | break | 10 | 11 | 12 | 13 | break | 14 | 15 | 1-15 | 5-11 | 7-8 | 9-10 | 13-14 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_4LFB_001 | 4LFB | 0.0000 | 1 | A | SSU rRNA | G | 115 | A | 116 | G | 117 | U | 118 | A | 119 | A | 120 | G | 122 | * | U | 239 | C | 240 | * | G | 286 | U | 287 | A | 288 | G | 289 | * | C | 311 | C | 312 | cWW | tHW | cWW | cWW | cWW |
| 2 | J4_5J7L_001 | 5J7L | 0.0834 | 1 | AA | SSU rRNA | G | 115 | A | 116 | G | 117 | U | 118 | A | 119 | A | 120 | G | 122 | * | U | 239 | G | 240 | * | C | 286 | U | 287 | A | 288 | G | 289 | * | C | 311 | C | 312 | cWW | tHW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAGUAACG*UC*GUAG*CC | 1 |
| GAGUAAUG*UG*CUAG*CC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGUAAC**UA* | 1 |
| AGUAAU**UA* | 1 |
Release history
| Release | 3.2 | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-02-09 | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
- Heat map statistics
- Min 0.08 | Avg 0.04 | Max 0.08
Coloring options: