#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 6break 7 8 9 10break 11 121-123-43-85-86-710-11
1 J4_4YCO_0014YCO0.34294tRNA junctionD tRNAA7A9G10*C25A26G27*C43G44G46C49*G65U66cWWcWWcWWcWW
2 J4_2CSX_0012CSX0.00004tRNA junctionCRNA (75-MER)G7A9G10*C25G26G27*C43A44G46G49*C65C66cWWcWWncHScWWcWW
3 J4_3WFS_0013WFS0.19904tRNA junctionA tRNAG7A9G10*C25A26C27*G43G44G46G49*C65C66cWWcWWcHWcWWcWW
4 J4_1QTQ_0011QTQ0.40164tRNA junctionB tRNAA907C909G910*C925A926C927*G943C944A945C949*G965U966cWWcWWcWWcWWcWW
5 J4_1B23_0011B230.64243tRNA junctionR tRNAU7A9A10*U25A26G27*U43C44A46U49*A65A66cWWcWWncWWcWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
AUAG*CAG*CGUGUCC*GU1
GUAG*CGG*CAGGUCG*CC1
GUAG*CAC*GGUGUCG*CC1
AUCG*CAC*GCAUUCC*GU1
U(4SU)AA*UAG*UCUAGU*AA1
Non-Watson-Crick part of the motif
SequenceCounts
UA*A*GUGUC*2
UA*G*AGGUC*1
UC*A*CAUUC*1
(4SU)A*A*CUAG*1

Release history

Release3.23.33.43.53.63.73.83.93.103.113.123.133.143.153.163.173.183.193.203.213.223.233.243.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.473.483.493.503.513.523.533.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.763.773.783.793.803.813.823.83
Date2018-02-092018-03-082018-04-062018-05-042018-06-012018-06-292018-07-272018-08-242018-09-212018-10-192018-11-162018-12-142019-01-112019-02-082019-03-082019-04-052019-05-032019-05-312019-06-282019-07-262019-08-232019-09-192019-10-162019-11-132019-12-112020-01-082020-02-052020-03-042020-04-012020-04-292020-05-272020-06-242020-07-222020-08-192020-09-162020-10-142020-11-112020-12-092021-01-062021-02-032021-03-032021-03-312021-04-282021-05-262021-06-232021-07-212021-08-182021-09-152021-10-132021-11-102021-12-082022-01-052022-02-022022-03-022022-03-302022-04-272022-05-252022-06-222022-07-202022-08-172022-09-142022-10-122022-11-092022-12-072023-01-042023-02-012023-03-012023-03-292023-04-262023-05-242023-06-212023-07-192023-08-162023-09-132023-10-112023-11-082023-12-062024-01-032024-01-312024-02-282024-03-272024-04-24
StatusNew id, no parentsExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • tRNA junction (5)
  • Basepair signature
    cWW-F-F-F-cWW-cWW-F-cWW
    Heat map statistics
    Min 0.20 | Avg 0.39 | Max 0.75
    Help

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