Motif J4_64075.1 Version J4_64075.1 of this group appears in releases 3.3 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | break | 16 | 17 | 18 | 19 | 20 | 1-18 | 1-20 | 2-19 | 3-4 | 5-6 | 7-11 | 12-13 | 13-18 | 14-17 | 15-16 | 18-20 | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_4V9F_008 | 4V9F | 0.3791 | 1 | 0 | LSU rRNA | C | 1889 | U | 1890 | G | 1891 | * | C | 1946 | G | 1947 | * | C | 1965 | U | 1966 | U | 1967 | A | 1968 | A | 1969 | G | 1970 | G | 1971 | U | 1972 | A | 1973 | G | 1974 | * | U | 2008 | G | 2009 | A | 2010 | A | 2011 | G | 2013 | tsS | cWW | cWH | cWW | cWW | tWW | cSH | tWH | tHS | cWW | cSs |
| 2 | J4_5J7L_026 | 5J7L | 0.0000 | 1 | DA | LSU rRNA | C | 1833 | U | 1834 | 2MG | 1835 | * | C | 1905 | G | 1906 | * | C | 1924 | C | 1925 | U | 1926 | A | 1927 | A | 1928 | G | 1929 | G | 1930 | U | 1931 | A | 1932 | G | 1933 | * | C | 1967 | G | 1968 | A | 1969 | A | 1970 | G | 1972 | tsS | cWW | cWH | cWW | cWW | tWW | cSH | tWH | tHS | cWW | cSs |
| 3 | J4_4Y4O_021 | 4Y4O | 0.0865 | 1 | 2A | LSU rRNA | U | 1833 | U | 1834 | G | 1835 | * | C | 1905 | G | 1906 | * | C | 1924 | C | 1925 | U | 1926 | A | 1927 | A | 1928 | G | 1929 | G | 1930 | U | 1931 | A | 1932 | G | 1933 | * | C | 1967 | G | 1968 | A | 1969 | A | 1970 | A | 1972 | tsS | cWW | cWH | cWW | cWW | tWW | cSH | tWH | tHS | cWW | |
| 4 | J4_5TBW_007 | 5TBW | 0.1264 | 1 | 1 | LSU rRNA | C | 2192 | U | 2193 | G | 2194 | * | C | 2248 | G | 2249 | * | C | 2267 | U | 2268 | U | 2269 | A | 2270 | A | 2271 | G | 2272 | G | 2273 | U | 2274 | A | 2275 | G | 2276 | * | U | 2310 | G | 2311 | A | 2312 | A | 2313 | G | 2315 | tsS | cWW | cWH | cWW | cWW | ntSW | cSH | tWH | tHS | cWW | cSs |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUG*CG*CUUAAGGUAG*UGAAUG | 2 |
| CU2MG*CG*CCUAAGGUAG*CGAAUG | 1 |
| UUG*CG*CCUAAGGUAG*CGAAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U**UUAAGGUA*GAAU | 2 |
| U**CUAAGGUA*GAAU | 1 |
| U**CUAAGGUA*GAAA | 1 |
Release history
| Release | 3.2 | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-02-09 | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 | 2021-08-18 | 2021-09-15 | 2021-10-13 | 2021-11-10 | 2021-12-08 | 2022-01-05 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-tWW-cWW-F-F-cHW-F-cWW-tSS-cSS-cSH-tWH-tHS-cWW
- Heat map statistics
- Min 0.09 | Avg 0.20 | Max 0.44
Coloring options: