Motif J4_69051.2 Version J4_69051.2 of this group appears in releases 3.48 to 3.53

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8		9		10	break		11		12	break		13		14		15		16		17		18		19		20	1-20	2-3	3-7	3-8	4-19	5-6	9-18	10-11	12-13
1	J4_7A0S_005	7A0S	0.1688	1	X	LSU rRNA	G	1323	G	1324	U	1325	U	1326	C	1327	*	G	1351	G	1352	A	1353	A	1355	G	1356	*	C	1417	C	1418	*	G	1613	C	1614	C	1615	C	1616	G	1617	U	1618	A	1619	C	1620	cWW			ntWW	cWW	cWW	ntHW	cWW	cWW
2	J4_4WF9_005	4WF9	0.1569	1	X	LSU rRNA	G	1347	U	1348	U	1349	U	1350	C	1351	*	G	1375	G	1376	U	1377	A	1379	G	1380	*	C	1441	C	1442	*	G	1641	C	1642	C	1643	C	1644	G	1645	U	1646	A	1647	C	1648	cWW		ntSW		cWW	cWW	tHW	cWW	cWW
3	J4_4Y4O_017	4Y4O	0.1377	1	2A	LSU rRNA	G	1310	G	1311	U	1312	U	1313	C	1314	*	G	1338	G	1339	U	1340	A	1342	G	1343	*	C	1404	U	1405	*	A	1597	C	1598	C	1599	C	1600	G	1601	U	1602	A	1603	C	1604	cWW	cSH			cWW	cWW	tHW	cWW	cWW
4	J4_5TBW_004	5TBW	0.0000	1	1	LSU rRNA	G	1492	G	1493	U	1494	U	1495	C	1496	*	G	1520	G	1521	U	1522	A	1524	G	1525	*	C	1614	C	1615	*	G	1829	G	1830	U	1831	C	1832	G	1833	U	1834	A	1835	C	1836	cWW				ncHW	cWW	tHW	cWW	cWW
5	J4_4V9F_004	4V9F	0.0758	1	0	LSU rRNA	G	1416	G	1417	U	1418	U	1419	C	1420	*	G	1444	G	1445	U	1446	A	1448	G	1449	*	C	1513	C	1514	*	G	1672	U	1673	C	1674	C	1675	G	1676	U	1677	A	1678	C	1679	cWW				cWW	cWW	tHW	cWW	cWW
6	J4_5J7L_022	5J7L	0.1250	1	DA	LSU rRNA	G	1310	G	1311	U	1312	U	1313	C	1314	*	G	1338	G	1339	U	1340	A	1342	G	1343	*	C	1404	U	1405	*	A	1597	A	1598	U	1599	C	1600	G	1601	U	1602	A	1603	C	1604	cWW				cWW	cWW	tHW	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GGUUCGGAAAGCC*GCCCGUAC	1
GUUUCGGUUAGCC*GCCCGUAC	1
GGUUCGGUUAGCU*ACCCGUAC	1
GGUUCGGUUAGCC*GGUCGUAC	1
GGUUCGGUUAGCC*GUCCGUAC	1
GGUUCGGUGAGCU*AAUCGUAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
GUUGAAA*CCCGUA	1
UUUGUUA*CCCGUA	1
GUUGUUA*CCCGUA	1
GUUGUUA*GUCGUA	1
GUUGUUA*UCCGUA	1
GUUGUGA*AUCGUA	1

Release history

Release	3.48	3.49	3.50	3.51	3.52	3.53
Date	2021-08-18	2021-09-15	2021-10-13	2021-11-10	2021-12-08	2022-01-05
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (6)
Basepair signature: cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
Heat map statistics: Min 0.08 | Avg 0.12 | Max 0.22

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Coloring options: Nucleotide numbers

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