Motif J5_01737.1 Version J5_01737.1 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | break | 14 | 15 | break | 16 | 17 | 18 | break | 19 | 20 | 21 | 1-5 | 1-21 | 2-3 | 3-12 | 4-10 | 4-12 | 5-11 | 5-21 | 6-9 | 7-8 | 13-14 | 15-16 | 17-20 | 18-19 | |||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J5_9DFE_001 | 9DFE | 0.0817 | 1 | 1A | LSU rRNA | C | 47 | G | 48 | A | 49 | G | 51 | A | 52 | A | 53 | G | 54 | * | C | 116 | G | 117 | A | 118 | A | 119 | U | 120 | G | 121 | * | C | 130 | G | 131 | * | C | 148 | A | 149 | C | 150 | * | G | 176 | G | 177 | G | 178 | ncsS | cWW | ncSs | cHW | tSH | tHH | tHS | cWW | cWW | cWW | cWW | |||
| 2 | J5_5J7L_013 | 5J7L | 0.0000 | 1 | DA | LSU rRNA | C | 47 | G | 48 | A | 49 | G | 51 | A | 52 | A | 53 | G | 54 | * | C | 116 | G | 117 | A | 118 | A | 119 | U | 120 | G | 121 | * | C | 130 | A | 131 | * | U | 148 | A | 149 | U | 150 | * | A | 176 | G | 177 | G | 178 | ncsS | cWW | ncSs | cHW | tSH | tHH | tHS | cWW | cWW | cWW | cWW | |||
| 3 | J5_4WF9_001 | 4WF9 | 0.1026 | 1 | X | LSU rRNA | C | 47 | A | 48 | A | 49 | G | 51 | A | 52 | A | 53 | G | 54 | * | C | 115 | G | 116 | A | 117 | A | 118 | U | 119 | G | 120 | * | C | 129 | A | 130 | * | U | 149 | A | 150 | U | 151 | * | A | 178 | A | 179 | G | 180 | ncsS | cWW | tSH | ntHH | tSs | tHS | cWW | cWW | cWW | ncWw | ncWW | |||
| 4 | J5_8P9A_010 | 8P9A | 0.2292 | 1 | AT+AR | 5.8S rRNA | C | 35 | G | 36 | A | 37 | G | 39 | A | 40 | A | 41 | G | 42 | * | U | 102 | G | 103 | A | 104 | A | 105 | C | 106 | G | 107 | * | C | 115 | G | 116 | * | C | 137 | A | 138 | U | 139 | * | A | 20 | G | 21 | G | 22 | cWW | tSH | tWW | tHH | tHS | cWW | cWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAUGAAG*CGAAUG*CG*CAC*GGG | 1 |
| CGAUGAAG*CGAAUG*CA*UAU*AGG | 1 |
| CAAUGAAG*CGAAUG*CA*UAU*AAG | 1 |
| AGG*CGAUGAAG*UGAACG*CG*CAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAUGAA*GAAU**A*G | 2 |
| AAUGAA*GAAU**A*A | 1 |
| G*GAUGAA*GAAC**A | 1 |
- Annotations
-
- (4)
- Basepair signature
- cWW-F-F-F-cWW-tSH-tHH-F-tHS-cWW-cWW-cWW-F
- Heat map statistics
- Min 0.08 | Avg 0.13 | Max 0.25
Coloring options: