#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 7break 8 9 10 11 12 13break 14 15break 16 17 18break 19 20 211-51-212-33-124-104-125-115-216-97-813-1415-1617-2018-19
1 J5_9DFE_0019DFE0.081711A LSU rRNAC47G48A49G51A52A53G54*C116G117A118A119U120G121*C130G131*C148A149C150*G176G177G178ncsScWWncSscHWtSHtHHtHScWWcWWcWWcWW
2 J5_5J7L_0135J7L0.00001DA LSU rRNAC47G48A49G51A52A53G54*C116G117A118A119U120G121*C130A131*U148A149U150*A176G177G178ncsScWWncSscHWtSHtHHtHScWWcWWcWWcWW
3 J5_4WF9_0014WF90.10261X LSU rRNAC47A48A49G51A52A53G54*C115G116A117A118U119G120*C129A130*U149A150U151*A178A179G180ncsScWWtSHntHHtSstHScWWcWWcWWncWwncWW
4 J5_8P9A_0108P9A0.22921AT+AR 5.8S rRNAC35G36A37G39A40A41G42*U102G103A104A105C106G107*C115G116*C137A138U139*A20G21G22cWWtSHtWWtHHtHScWWcWWcWWcWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGAUGAAG*CGAAUG*CG*CAC*GGG1
CGAUGAAG*CGAAUG*CA*UAU*AGG1
CAAUGAAG*CGAAUG*CA*UAU*AAG1
AGG*CGAUGAAG*UGAACG*CG*CAU1
Non-Watson-Crick part of the motif
SequenceCounts
GAUGAA*GAAU**A*G2
AAUGAA*GAAU**A*A1
G*GAUGAA*GAAC**A1

Release history

Release3.913.923.933.94
Date2024-12-042025-01-012025-01-292025-02-26
StatusNew id, 1 parentExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (4)
  • Basepair signature
    cWW-F-F-F-cWW-tSH-tHH-F-tHS-cWW-cWW-cWW-F
    Heat map statistics
    Min 0.08 | Avg 0.13 | Max 0.25
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 1.1563 s